Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G100000.1 | Wheat | nucleus | 72.99 | 72.81 |
| TraesCS1B01G119200.1 | Wheat | nucleus | 72.63 | 72.46 |
| HORVU1Hr1G021560.16 | Barley | nucleus | 71.56 | 71.39 |
| EES19033 | Sorghum | nucleus | 72.75 | 71.06 |
| TraesCS1A01G091400.2 | Wheat | nucleus | 72.63 | 70.62 |
| Zm00001d010866_P004 | Maize | nucleus | 71.21 | 69.24 |
| KRG92892 | Soybean | nucleus | 49.64 | 49.06 |
| GSMUA_Achr8P06700_001 | Banana | nucleus | 46.21 | 48.75 |
| AT5G27680.2 | Thale cress | nucleus | 46.21 | 45.45 |
| Solyc01g099460.1.1 | Tomato | nucleus | 44.79 | 44.47 |
| Bra009948.1-P | Field mustard | nucleus | 45.97 | 42.13 |
| CDX80626 | Canola | golgi, mitochondrion | 33.06 | 37.05 |
| Os02t0780800-01 | Rice | cytosol | 14.1 | 36.96 |
| Solyc02g088430.1.1 | Tomato | extracellular, mitochondrion, plastid, vacuole | 21.45 | 33.46 |
| CDX80633 | Canola | nucleus | 13.27 | 30.27 |
| CDX80627 | Canola | nucleus | 13.27 | 30.11 |
| Os11t0708600-02 | Rice | nucleus | 16.71 | 26.96 |
| Os11t0672700-01 | Rice | nucleus | 18.6 | 26.7 |
| Os07t0681600-01 | Rice | nucleus | 19.31 | 18.4 |
| Os04t0486800-01 | Rice | nucleus | 16.47 | 15.01 |
| Os04t0433800-01 | Rice | nucleus | 17.54 | 12.23 |
Protein Annotations
Description
Hypothetical conserved gene. (Os05t0150600-01);DNA helicase, ATP-dependent, RecQ type domain containing protein. (Os05t0150600-02)
Coordinates
chr5:-:2906339..2913774
Molecular Weight (calculated)
93510.7 Da
IEP (calculated)
8.464
GRAVY (calculated)
-0.379
Length
844 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDGAAGGDV SADRVIAELL DMGFEFDEIS RAIGAVGTRC ADVLEFMLGG SGNGKMKKAS RETRSRSCVS SNAEARPSDD GNKLVNPRKR LKQSSITDHL
101: ASNTGCRRGS CGEKASTSYP CLAASDDPRA PVAVSADVCS ALKPESQFLL ANSRSESDLG HKISAVLRKH FGFSCVKGFQ KEALDAWFAH KDSLVLAATG
201: SGKSLCFQIP ALLTAKVVVV ISPLISLMHD QCLKLAKHGI SACFLGSGQP DSRVEGKAMS GMYKIIYVCP ETVLRLMEPL KKLAEKPGIA LFAIDEVHCV
301: SKWGHDFRPD YRRLSVLREN FSASKLKFLE HDIPLMALTA TATIPVRADI IKSLKMSEDT VVVLTSFFRP NLRFRVKHSR TSVSAYKKDF RELVVTYNDS
401: RNFRGKGQKA LSEINPDSES SSYESPDDAM SDDEDANVDS MSHEDNSFGK TKVGMPLINE NAENELDVYP GVDDFDVTCG EFLECSWPEN SASSSQCNKT
501: GSSSSEIADQ GPTIIYVPTR KQTVELANYL CKTGLKAAAY NAKMPKSHLR QVHQQFHCNA LEVVVATIAF GMGIDKSNVR RIIHYGFPQS LEAYYQEAGR
601: AGRDGKLADC TLYCNLLRAP TLLPNKRSKE QTKVAYRMLR DCFQCDICIN GPPQMHDFKE DAVMFMSVLQ AQNGQATEDM GCSNIPRYIS GRQRFGEVPN
701: FRGVVSYIRE KFPRFATTDK VWWEGLARIL EGRGYIQEAA EIPRVLIQYP EVTEAGLNFL SMQSEEEGLY EYLNAAMLLV MNDPKPISTS SEWGRGWADP
801: AIRRQRLAGK KMGRRKGKRH SRSHSTGFTT ARQRLAEILS KRRR
101: ASNTGCRRGS CGEKASTSYP CLAASDDPRA PVAVSADVCS ALKPESQFLL ANSRSESDLG HKISAVLRKH FGFSCVKGFQ KEALDAWFAH KDSLVLAATG
201: SGKSLCFQIP ALLTAKVVVV ISPLISLMHD QCLKLAKHGI SACFLGSGQP DSRVEGKAMS GMYKIIYVCP ETVLRLMEPL KKLAEKPGIA LFAIDEVHCV
301: SKWGHDFRPD YRRLSVLREN FSASKLKFLE HDIPLMALTA TATIPVRADI IKSLKMSEDT VVVLTSFFRP NLRFRVKHSR TSVSAYKKDF RELVVTYNDS
401: RNFRGKGQKA LSEINPDSES SSYESPDDAM SDDEDANVDS MSHEDNSFGK TKVGMPLINE NAENELDVYP GVDDFDVTCG EFLECSWPEN SASSSQCNKT
501: GSSSSEIADQ GPTIIYVPTR KQTVELANYL CKTGLKAAAY NAKMPKSHLR QVHQQFHCNA LEVVVATIAF GMGIDKSNVR RIIHYGFPQS LEAYYQEAGR
601: AGRDGKLADC TLYCNLLRAP TLLPNKRSKE QTKVAYRMLR DCFQCDICIN GPPQMHDFKE DAVMFMSVLQ AQNGQATEDM GCSNIPRYIS GRQRFGEVPN
701: FRGVVSYIRE KFPRFATTDK VWWEGLARIL EGRGYIQEAA EIPRVLIQYP EVTEAGLNFL SMQSEEEGLY EYLNAAMLLV MNDPKPISTS SEWGRGWADP
801: AIRRQRLAGK KMGRRKGKRH SRSHSTGFTT ARQRLAEILS KRRR
001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
Arabidopsis Description
RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.