Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80627 | Canola | nucleus | 100.0 | 99.46 |
| Bra009948.1-P | Field mustard | nucleus | 94.32 | 37.89 |
| AT5G27680.2 | Thale cress | nucleus | 62.97 | 27.16 |
| GSMUA_Achr8P06700_001 | Banana | nucleus | 41.89 | 19.38 |
| KRG92892 | Soybean | nucleus | 41.89 | 18.15 |
| Solyc02g088430.1.1 | Tomato | extracellular, mitochondrion, plastid, vacuole | 24.05 | 16.45 |
| EES19033 | Sorghum | nucleus | 35.68 | 15.28 |
| TraesCS1B01G119200.1 | Wheat | nucleus | 34.86 | 15.25 |
| TraesCS1D01G100000.1 | Wheat | nucleus | 34.59 | 15.13 |
| HORVU1Hr1G021560.16 | Barley | nucleus | 34.59 | 15.13 |
| Zm00001d010866_P004 | Maize | nucleus | 35.41 | 15.09 |
| TraesCS1A01G091400.2 | Wheat | nucleus | 34.59 | 14.75 |
| Solyc01g099460.1.1 | Tomato | nucleus | 33.24 | 14.47 |
| Os05t0150600-02 | Rice | nucleus | 30.27 | 13.27 |
| CDY27742 | Canola | mitochondrion | 0.81 | 12.0 |
| CDY27743 | Canola | nucleus | 9.73 | 5.91 |
| CDY66905 | Canola | nucleus | 9.73 | 5.91 |
| CDY12420 | Canola | nucleus | 12.97 | 5.8 |
| CDY64039 | Canola | nucleus | 10.54 | 5.44 |
| CDX97959 | Canola | nucleus | 3.78 | 5.24 |
| CDX89177 | Canola | nucleus | 3.78 | 5.24 |
| CDY34859 | Canola | nucleus | 14.86 | 4.84 |
| CDY34669 | Canola | nucleus | 14.86 | 4.75 |
| CDY40476 | Canola | nucleus | 14.05 | 4.62 |
| CDY12873 | Canola | nucleus | 14.05 | 4.61 |
| CDY20972 | Canola | nucleus | 14.32 | 4.48 |
| CDY20595 | Canola | nucleus | 14.32 | 4.47 |
| CDY03955 | Canola | nucleus | 10.81 | 4.34 |
| CDY15702 | Canola | nucleus | 10.81 | 4.12 |
| CDX80626 | Canola | golgi, mitochondrion | 2.7 | 1.33 |
| CDY41637 | Canola | nucleus | 1.08 | 1.2 |
Protein Annotations
| EnsemblPlants:CDX80633 | EnsemblPlantsGene:GSBRNA2T00133772001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:P-loop_NTPase | InterPro:RecQ_Zn-bd |
| InterPro:WH-like_DNA-bd_sf | ncoils:Coil | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF69 | PFAM:PF16124 | ProteinID:CDX80633 |
| ProteinID:CDX80633.1 | SEG:seg | SUPFAM:SSF52540 | UniParc:UPI0004EE41F7 | MapMan:35.1 | : |
Description
BnaC07g28110D
Coordinates
chrLK031821:+:1766982..1768740
Molecular Weight (calculated)
43241.8 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.649
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTWFSPSRR DPTEAYYQEA GRAGRDGELA ECVLYANLSR VPTLLPSRRS KEQTEQAYKM LSDCFRYGMN TSQCRAKILV EYFGEDFTSK KCNLCDVCTK
101: GPPEQVNVRE EANLLFQVIS AFHAETSSEH ASYEDYGLGN SKQKKLSYKP NLFFFISRIR EQSQKLMEID RLWWKGLARI MEAEGYIKEM DNKSRRVEIA
201: FIEPTEKGRK QLAFEDDKPL YVYPEADMLV SLKQRRTYSG FSSWGKGWAD PEIRRQRLET MKRPRERKPR RERSRQQQRS FFFALSPMFR QRRRAIEKLK
301: LVNEALVAAE ENVARLQERH DVILKEICSY YLVNSELQEA LVAARAAVDV ASGFVIELRR LQLNLLNSLS
101: GPPEQVNVRE EANLLFQVIS AFHAETSSEH ASYEDYGLGN SKQKKLSYKP NLFFFISRIR EQSQKLMEID RLWWKGLARI MEAEGYIKEM DNKSRRVEIA
201: FIEPTEKGRK QLAFEDDKPL YVYPEADMLV SLKQRRTYSG FSSWGKGWAD PEIRRQRLET MKRPRERKPR RERSRQQQRS FFFALSPMFR QRRRAIEKLK
301: LVNEALVAAE ENVARLQERH DVILKEICSY YLVNSELQEA LVAARAAVDV ASGFVIELRR LQLNLLNSLS
001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQS LEAYYQEAGR AGRDGELAEC VLYADLSRAP TLLPSRRSKE QTEQAYKMLS
601: DCFRYGMNTS QCRAKILVEY FGEEFSSKKC NSCDVCTEGP PELVDVREEA NLLFQVITAF HLQVDNDSEH APYEDYGLGN SKQNKLSHKP NLLFFISKLR
701: EQCEKFKETD CLWWKGLARI MEAEGYIKEM DNKDRRVEIK FIQPTEKGKK QLDFQDDKPL YVYPEADMLL SLKQDRTYSG FSEWGKGWAD PEIRRQRLER
801: RERKPRRERK PRKKRTRGRS STKLHPWRSK E
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQS LEAYYQEAGR AGRDGELAEC VLYADLSRAP TLLPSRRSKE QTEQAYKMLS
601: DCFRYGMNTS QCRAKILVEY FGEEFSSKKC NSCDVCTEGP PELVDVREEA NLLFQVITAF HLQVDNDSEH APYEDYGLGN SKQNKLSHKP NLLFFISKLR
701: EQCEKFKETD CLWWKGLARI MEAEGYIKEM DNKDRRVEIK FIQPTEKGKK QLDFQDDKPL YVYPEADMLL SLKQDRTYSG FSEWGKGWAD PEIRRQRLER
801: RERKPRRERK PRKKRTRGRS STKLHPWRSK E
Arabidopsis Description
RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.