Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G100000.1 | Wheat | nucleus | 97.28 | 97.28 |
| HORVU1Hr1G021560.16 | Barley | nucleus | 94.21 | 94.21 |
| TraesCS1A01G091400.2 | Wheat | nucleus | 95.74 | 93.32 |
| Os05t0150600-02 | Rice | nucleus | 72.46 | 72.63 |
| EES19033 | Sorghum | nucleus | 74.11 | 72.57 |
| Zm00001d010866_P004 | Maize | nucleus | 72.81 | 70.97 |
| KRG92892 | Soybean | nucleus | 51.3 | 50.82 |
| GSMUA_Achr8P06700_001 | Banana | nucleus | 47.75 | 50.5 |
| AT5G27680.2 | Thale cress | nucleus | 48.7 | 48.02 |
| Solyc01g099460.1.1 | Tomato | nucleus | 46.81 | 46.59 |
| Bra009948.1-P | Field mustard | nucleus | 48.58 | 44.63 |
| CDX80626 | Canola | golgi, mitochondrion | 33.81 | 37.98 |
| Solyc02g088430.1.1 | Tomato | extracellular, mitochondrion, plastid, vacuole | 22.46 | 35.12 |
| CDX80633 | Canola | nucleus | 15.25 | 34.86 |
| CDX80627 | Canola | nucleus | 15.25 | 34.68 |
| TraesCS4B01G126600.1 | Wheat | nucleus | 19.62 | 26.99 |
| TraesCS4B01G138800.1 | Wheat | nucleus | 18.91 | 22.79 |
| TraesCS6B01G371000.2 | Wheat | nucleus | 19.98 | 22.21 |
| TraesCS2B01G120600.1 | Wheat | nucleus | 21.75 | 20.6 |
| TraesCS2B01G363700.1 | Wheat | nucleus | 17.26 | 15.73 |
| TraesCS2B01G321700.1 | Wheat | nucleus | 19.62 | 13.82 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006310 | GO:GO:0006950 | GO:GO:0008026 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043138 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR036388 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF16124 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF69 | InterPro:RecQ_Zn-bd |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | EnsemblPlantsGene:TraesCS1B01G119200 | EnsemblPlants:TraesCS1B01G119200.1 |
| InterPro:WH-like_DNA-bd_sf | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:-:141110349..141124148
Molecular Weight (calculated)
93795.6 Da
IEP (calculated)
7.921
GRAVY (calculated)
-0.384
Length
846 amino acids
Sequence
(BLAST)
(BLAST)
001: MDANSVGTDV SADHVIAELL EMGFEFDKIS EAIGVVGPCR ADVVEFVLNG SGSVQRKSGG GSQRRSSDRS ARLANPRGKL KQSSITDHIA STTGSKTESC
101: GEEPSTSYSC LAANMNPAST AAICLKPKPE HQILVDDPRG EFDRTDKISA ILQKHFGFSC VKNFQKEALD AWFAHKDCLV LAATGSGKSL CFQIPALLTT
201: KVVVVISPLI SLMHDQCLKL AKHGISACFL GSGQPDNRVE GKAMAGMYKI IYVCPETVLR LMEPLKKLAE KPGIALFAID EVHCVSKWGH DFRPDYRKLS
301: VLRQNFCSSK LKFLEHDIPL MALTATATLP VREDILKSLK MSGHTVVVLT SFFRPNLRFN VKHSKTSASS YGKDFQELIG TYNASRNFRG KSQKILHEVE
401: PESESSSYES LDDSASDDED AISDKTELAK SFVKENAEHE LDQYPGVDDF DVSCGEFLES SRPESFAFPV QSVETSSSES LDQGPTIVYV PTRKGTVELA
501: NYLGKSGLKA AAYNAKMPRS HLRQVHEQFH SNALEVVVAT IAFGMGIDKS NVRRIIHYGL PQSLEAYYQE AGRAGRDGKL SDCTLYCNSM RTPTLLPNKR
601: SDEQTRAAYR MLRDCFHYAL NTSTCRAKIL VKYFGEEFGS DGCEMCDVCI NGPPEMHDFK EEAVVFMNVL QAQAGQATEG MDYNSTDCYT SGRRNIGAVP
701: DFRMAVSYIR EKIPRFAMTD KIWWQGLARI LEDMGYIQEA AEIPRVLIQH PELTRAGLNF LSLQPDEEGL YAYPDAATLL AISNPKSFSS SSEWGRGWAD
801: PEIRRQRLAG RTGRRKRKRG SRKQPTGFTT AKERLSAILS KSKRRR
101: GEEPSTSYSC LAANMNPAST AAICLKPKPE HQILVDDPRG EFDRTDKISA ILQKHFGFSC VKNFQKEALD AWFAHKDCLV LAATGSGKSL CFQIPALLTT
201: KVVVVISPLI SLMHDQCLKL AKHGISACFL GSGQPDNRVE GKAMAGMYKI IYVCPETVLR LMEPLKKLAE KPGIALFAID EVHCVSKWGH DFRPDYRKLS
301: VLRQNFCSSK LKFLEHDIPL MALTATATLP VREDILKSLK MSGHTVVVLT SFFRPNLRFN VKHSKTSASS YGKDFQELIG TYNASRNFRG KSQKILHEVE
401: PESESSSYES LDDSASDDED AISDKTELAK SFVKENAEHE LDQYPGVDDF DVSCGEFLES SRPESFAFPV QSVETSSSES LDQGPTIVYV PTRKGTVELA
501: NYLGKSGLKA AAYNAKMPRS HLRQVHEQFH SNALEVVVAT IAFGMGIDKS NVRRIIHYGL PQSLEAYYQE AGRAGRDGKL SDCTLYCNSM RTPTLLPNKR
601: SDEQTRAAYR MLRDCFHYAL NTSTCRAKIL VKYFGEEFGS DGCEMCDVCI NGPPEMHDFK EEAVVFMNVL QAQAGQATEG MDYNSTDCYT SGRRNIGAVP
701: DFRMAVSYIR EKIPRFAMTD KIWWQGLARI LEDMGYIQEA AEIPRVLIQH PELTRAGLNF LSLQPDEEGL YAYPDAATLL AISNPKSFSS SSEWGRGWAD
801: PEIRRQRLAG RTGRRKRKRG SRKQPTGFTT AKERLSAILS KSKRRR
001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
Arabidopsis Description
RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.