Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010866_P004 | Maize | nucleus | 90.39 | 89.98 |
| TraesCS1D01G100000.1 | Wheat | nucleus | 73.03 | 74.59 |
| TraesCS1B01G119200.1 | Wheat | nucleus | 72.57 | 74.11 |
| HORVU1Hr1G021560.16 | Barley | nucleus | 71.41 | 72.93 |
| Os05t0150600-02 | Rice | nucleus | 71.06 | 72.75 |
| TraesCS1A01G091400.2 | Wheat | nucleus | 72.69 | 72.35 |
| KRG92892 | Soybean | nucleus | 50.81 | 51.41 |
| GSMUA_Achr8P06700_001 | Banana | nucleus | 47.34 | 51.12 |
| AT5G27680.2 | Thale cress | nucleus | 47.57 | 47.9 |
| Solyc01g099460.1.1 | Tomato | nucleus | 45.02 | 45.76 |
| Bra009948.1-P | Field mustard | nucleus | 47.57 | 44.63 |
| CDX80626 | Canola | golgi, mitochondrion | 32.99 | 37.85 |
| Solyc02g088430.1.1 | Tomato | extracellular, mitochondrion, plastid, vacuole | 22.45 | 35.86 |
| CDX80633 | Canola | nucleus | 15.28 | 35.68 |
| CDX80627 | Canola | nucleus | 15.28 | 35.48 |
| OQU81827 | Sorghum | cytosol, extracellular | 5.79 | 27.93 |
| EES10228 | Sorghum | nucleus | 19.21 | 26.6 |
| KXG38755 | Sorghum | nucleus | 19.1 | 23.24 |
| KXG31219 | Sorghum | nucleus | 19.68 | 22.61 |
| EER97745 | Sorghum | nucleus | 21.3 | 20.42 |
| EES12342 | Sorghum | plastid | 17.48 | 15.63 |
| EES06253 | Sorghum | nucleus | 18.98 | 13.72 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr9:-:4347773..4356095
Molecular Weight (calculated)
95856.2 Da
IEP (calculated)
8.812
GRAVY (calculated)
-0.467
Length
864 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDVSADGL IAELLDMGFD FDAISAAVGA VGPRRAEVLE LLLGGSAPRA GQEGRRGGGV PCRPAPSAAR PRPAGKGAKL PNPRGRLRQS SITDHVGSAT
101: GGRKESGREA STSLPCSSAP GDPRVPVGAD FCSKLGPQSR SLVENSTGES DQMDRVSAVL QKHFGFSCLK SFQKEVLDAW FAHRDCLVLA ATGSGKSLCF
201: QIPALLTAKI VVVISPLISL MHDQCLKLAN HGISACFLGS GQPDSRVEGK AMAGMYKIVY VCPETILRLM EPLKKLAEKP GIALFAIDEV HCVSKWGHDF
301: RPDYRRLSVL RENFSSSKLK FLKHDIPLMA LTATATIPVR EDIIKSLKMS KDTTIVLTSF FRPNLRFSVK HSKTSVSSYG KDFQELIGTY NASRKGQQII
401: HENDTDSERS SYESWNDSAS DYEDENVDSA SHGDKNVGKT KTSMSVVKEN IENELDLYQG VDDFDVSCGE FLECSRPESS KSPAQSNQTS SSECGDQGPT
501: IVYVPTRKET VEVANFLCKS GLRAAAYNAK MPKSHLRQVH QQFHCNDLEV VVATIAFGMG IDKSNVRRII HYGLPQSLEA YYQEAGRAGR DGKLSDCTLY
601: CNFFRAPTLL PNKRSEEQTK AAYRMLRDCF HYSLNTSTCR AKILVKYFGE DFGHDGCRMC DICTNGPPQM HDFKEEAIVF MNVLQGRSGG ETEDMIYSSV
701: PHYSSGRRGF GDVPNFRMVV SHIREKLPRF AATDKMWWQG LSRILEGLRY VQEAAETPRV SMQYPELTEE GLKFLRSSQS EEQPLYAYPD AAMLLAMKEP
801: RPFSDFSEWG RGWADPEIRR QRLAGKKAGR RKRKWRSRSR QQQPAGFTTA KERLAAILAK KRKR
101: GGRKESGREA STSLPCSSAP GDPRVPVGAD FCSKLGPQSR SLVENSTGES DQMDRVSAVL QKHFGFSCLK SFQKEVLDAW FAHRDCLVLA ATGSGKSLCF
201: QIPALLTAKI VVVISPLISL MHDQCLKLAN HGISACFLGS GQPDSRVEGK AMAGMYKIVY VCPETILRLM EPLKKLAEKP GIALFAIDEV HCVSKWGHDF
301: RPDYRRLSVL RENFSSSKLK FLKHDIPLMA LTATATIPVR EDIIKSLKMS KDTTIVLTSF FRPNLRFSVK HSKTSVSSYG KDFQELIGTY NASRKGQQII
401: HENDTDSERS SYESWNDSAS DYEDENVDSA SHGDKNVGKT KTSMSVVKEN IENELDLYQG VDDFDVSCGE FLECSRPESS KSPAQSNQTS SSECGDQGPT
501: IVYVPTRKET VEVANFLCKS GLRAAAYNAK MPKSHLRQVH QQFHCNDLEV VVATIAFGMG IDKSNVRRII HYGLPQSLEA YYQEAGRAGR DGKLSDCTLY
601: CNFFRAPTLL PNKRSEEQTK AAYRMLRDCF HYSLNTSTCR AKILVKYFGE DFGHDGCRMC DICTNGPPQM HDFKEEAIVF MNVLQGRSGG ETEDMIYSSV
701: PHYSSGRRGF GDVPNFRMVV SHIREKLPRF AATDKMWWQG LSRILEGLRY VQEAAETPRV SMQYPELTEE GLKFLRSSQS EEQPLYAYPD AAMLLAMKEP
801: RPFSDFSEWG RGWADPEIRR QRLAGKKAGR RKRKWRSRSR QQQPAGFTTA KERLAAILAK KRKR
001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
Arabidopsis Description
RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.