CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0708600-02	Rice	nucleus	60.99	82.79
TraesCS4D01G133500.1	Wheat	nucleus	81.27	82.08
TraesCS4A01G178600.5	Wheat	nucleus	81.13	81.82
HORVU0Hr1G008030.1	Barley	nucleus	41.13	81.56
TraesCS4B01G138800.1	Wheat	nucleus	80.42	81.34
Zm00001d030366_P007	Maize	nucleus	79.3	71.81
GSMUA_Achr4P27590_001	Banana	nucleus	71.13	70.83
KRH39703	Soybean	nucleus	69.15	70.65
Solyc08g074610.1.1	Tomato	nucleus	53.1	68.55
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	18.87	67.68
VIT_02s0087g00070.t01	Wine grape	nucleus	71.13	67.6
Bra038422.1-P	Field mustard	nucleus	66.06	66.52
AT1G31360.3	Thale cress	nucleus	66.2	63.6
CDY12420	Canola	nucleus	66.34	56.88
EES10228	Sorghum	nucleus	25.77	29.33
OQU81827	Sorghum	cytosol, extracellular	7.04	27.93
KXG31219	Sorghum	nucleus	27.46	25.93
EER97745	Sorghum	nucleus	28.03	22.09
EES06253	Sorghum	nucleus	36.34	21.59
EES19033	Sorghum	nucleus	23.24	19.1
EES12342	Sorghum	plastid	21.41	15.73

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:15.3.3.5.3	Gene3D:3.40.50.300	UniProt:A0A1B6QLH9	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	EnsemblPlants:KXG38755	ProteinID:KXG38755
ProteinID:KXG38755.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF16124
PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	InterPro:RecQ_Zn-bd
SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G275300	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI00081AC51F
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:53394018..53403033

Molecular Weight (calculated)

79857.0 Da

IEP (calculated)

7.456

GRAVY (calculated)

-0.332

Length

710 amino acids

Sequence
(BLAST)

001: MEDEENFEEE LLLVESELDD IQGQIKRLLD RQEELYERQS QLKALLEVSK VSRNKSNCKP SVTLEDWSGS FPWDSQADDT RLNIFGITSY RSNQREIINA
101: VMSGRDVLVI MAAGGGKSLC YQLPAVLRDG IALVVSPLLS LIQDQVMGLT ALGIPAYMLT STTNKEVEKF IYRALDKGEG ELKILYVTPE KISKSKRFMS
201: KVEKCHHAGR LSLVAVDEAH CCSQWGHDFR PDYKNLSILK IQFPTVPMIA LTATATSKVQ TDLIEMLHIP RCVKFVSTVN RPNLFYKVYQ KSPVGKVVID
301: EITNFITESY PNNESGIVYC FSRKECEQVA KELRDRGVLA EHYHADMDIV AREKIHMRWS KGQSQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECVLYYRPG DVPRQSSMVF YENCGLQNLY DIVRYCQSKS CRRGAFFRHF GEALQDCNGM CDNCASSIEL KDIDATCHTK ILVSLLHDLQ
501: LNDQRATLLQ LVDKFKVKWK GLGRSNQAVD LKREEIEQLI VQLIVDRVLK EEFQHTAYST NAYVTLGPLW KPALEGNRPV KLEIAVLGSQ ARAGGGDISK
601: GTKRSRMSDL EAKLDELRRE LSSSSTGAIS IFPHAVLSTQ QISLLSCQKP TTEAELEKVI GKVKTEKYGN RIIELMRSHI ADPGAGNGSV AKRRPKKDKD
701: VVCVESSDDE

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.