Factsheet for HORVU0Hr1G008030.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	39.11	70.71
Os11t0708600-02	Rice	nucleus	77.65	53.15
TraesCS4D01G133500.1	Wheat	nucleus	93.3	47.51
TraesCS4A01G178600.5	Wheat	nucleus	93.02	47.3
TraesCS4B01G138800.1	Wheat	nucleus	92.74	47.29
Solyc08g074610.1.1	Tomato	nucleus	72.07	46.91
HORVU0Hr1G002110.1	Barley	vacuole	17.6	46.67
KXG38755	Sorghum	nucleus	81.56	41.13
KRH39703	Soybean	nucleus	72.07	37.12
Zm00001d030366_P007	Maize	nucleus	81.01	36.99
GSMUA_Achr4P27590_001	Banana	nucleus	72.07	36.19
VIT_02s0087g00070.t01	Wine grape	nucleus	72.35	34.67
Bra038422.1-P	Field mustard	nucleus	67.6	34.33
AT1G31360.3	Thale cress	nucleus	67.88	32.88
CDY12420	Canola	nucleus	67.6	29.23
HORVU4Hr1G032190.1	Barley	nucleus	32.96	18.41
HORVU2Hr1G075870.8	Barley	nucleus, plastid	26.82	15.43
HORVU1Hr1G021560.16	Barley	nucleus	26.82	11.35
HORVU2Hr1G084110.2	Barley	plastid	25.42	9.59

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287DXL4	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:HORVU0Hr1G008030	EnsemblPlants:HORVU0Hr1G008030.1	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	SMART:SM00487
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000B46426E	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:47956359..47960610

Molecular Weight (calculated)

40179.3 Da

IEP (calculated)

6.428

GRAVY (calculated)

-0.236

Length

358 amino acids

Sequence
(BLAST)

001: MEDEGNIEEE LLLVESQLNE LQDKIKTLLD QQEELHERQA QLKALLEISK TSRDTSNSAP SVALEDWSGK FSWDSQADDT RFNVFGISSY RSNQREIINS
101: IMSGKDVLVI MAAGGGKSLC YQLPAVLRDG ITLVVSPLLS LIQDQVMGLA ALGIPAHMLT STTNKEIEKF IYKALEKGEG ELKILYVTPE KISKSKRFMS
201: KLEKCHHAGR LSLVAIDEAH CCSQWGHDFR PDYKNLGILK IQFPSVPMIA LTATATSKVQ MDLIEMLHIP RSVKFISTVN RPNLFYRVYE KSSVGKVVID
301: EIANFISESY PNNESGIVYC FSRKECEQHW RRSGSDSVER SMFRSASHLT GMGLGFMG

Best Arabidopsis Sequence Match ( AT1G31360.6 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.