Factsheet for HORVU0Hr1G002110.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	secretory
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g018710.2.1	Tomato	cytosol	68.15	22.44
HORVU0Hr1G008030.1	Barley	nucleus	46.67	17.6
TraesCS2B01G120600.1	Wheat	nucleus	100.0	15.12
TraesCS2D01G102800.1	Wheat	nucleus	100.0	15.12
TraesCS2A01G103300.1	Wheat	nucleus	99.26	15.01
EER97745	Sorghum	nucleus	87.41	13.1
Os07t0681600-01	Rice	nucleus	84.44	12.87
VIT_06s0004g08420.t01	Wine grape	nucleus	51.11	12.64
KRH30702	Soybean	nucleus	69.63	10.79
KRG98073	Soybean	nucleus	71.11	10.43
HORVU4Hr1G032190.1	Barley	nucleus	42.96	9.05
GSMUA_Achr10P...	Banana	nucleus	57.04	8.27
HORVU1Hr1G021560.16	Barley	nucleus	45.93	7.33
HORVU2Hr1G075870.8	Barley	nucleus, plastid	29.63	6.43
HORVU2Hr1G084110.2	Barley	plastid	39.26	5.58

Protein Annotations

EnsemblPlants:HORVU0Hr1G002110.1	EnsemblPlantsGene:HORVU0Hr1G002110	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:P-loop_NTPase
PANTHER:PTHR13710	PANTHER:PTHR13710:SF120	PFAM:PF00270	PFscan:PS51192	SUPFAM:SSF52540	UniParc:UPI000B4702E7
UniProt:A0A287DUQ3	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:9919098..9920118

Molecular Weight (calculated)

15123.3 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.013

Length

135 amino acids

Sequence
(BLAST)

001: YQIPPLVAKK TAVVVSPLLS LMQDQVMSLK QHGVRSEYLG STQMNSSVSS EAEKGMYDVL YMTPEKAIAL PSRFWSNLQA SGICLFAIDE AHCISEWGHD
101: FRPEYKQLHL LREHLLGVPF VALTATATER YGCFT

Best Arabidopsis Sequence Match ( AT5G27680.5 )
(BLAST)

001: MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF QIPALLTGKV VVVISPLISL MHDQCLKLSR
101: HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF RPHYRKLSVL RENFCASNLE FLEYDVPIMA
201: LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK KLAVISRESE EQTDFGSHDS ENIHETDYDE
301: DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT IIYVPTRKES VNIAKYLCGV GLKAAAYNAS
401: LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF
501: RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY EDYGLGNSKQ NKLSHKPNLL FFISKLREQC
601: EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK QDRTYSGFSE WGKGWADPEI RRQRLERRER
701: KPRRERKPRK KRTRGRSSTK LHPWRSKE

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.