Factsheet for Solyc09g018710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G002110.1	Barley	vacuole	22.44	68.15
VIT_06s0004g08420.t01	Wine grape	nucleus	55.61	41.76
KRH30702	Soybean	nucleus	67.07	31.57
KRG98073	Soybean	nucleus	68.78	30.65
TraesCS2B01G120600.1	Wheat	nucleus	65.37	30.01
TraesCS2A01G103300.1	Wheat	nucleus	65.37	30.01
TraesCS2D01G102800.1	Wheat	nucleus	65.12	29.9
EER97745	Sorghum	nucleus	65.61	29.86
Os07t0681600-01	Rice	nucleus	64.15	29.68
Solyc08g074610.1.1	Tomato	nucleus	39.51	29.45
GSMUA_Achr10P...	Banana	nucleus	56.59	24.92
Solyc01g100280.2.1	Tomato	nucleus	36.34	21.16
Solyc07g042010.2.1	Tomato	nucleus	34.63	20.73
Solyc01g099460.1.1	Tomato	nucleus	39.02	18.82
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	19.02	14.42
Solyc01g103960.2.1	Tomato	nucleus	37.32	12.97
Solyc05g014690.1.1	Tomato	nucleus	31.46	12.87
Solyc09g018690.2.1	Tomato	nucleus	6.83	5.52

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:K4CSD3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF120	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g018710.2	EnsemblPlants:Solyc09g018710.2.1	TIGRFAMs:TIGR00614	UniParc:UPI000276C301	:

Description

No Description!

Coordinates

chr9:-:16673601..16678758

Molecular Weight (calculated)

46484.8 Da

IEP (calculated)

7.243

GRAVY (calculated)

-0.145

Length

410 amino acids

Sequence
(BLAST)

001: MDMKSTLKKY FGYTEFRPYQ KEIIEKILDG KDCLVIMATG SGKSLCYQIP PLITGKVAVV ISPLISLMQD QVMTLKQRGI KADYLSSAQT DRGVQSNAEL
101: GHYDILYMTP EKACALPISF WSRLLKAGMC LLAVDEAHCI SEWGHDFRVE YKQLDKLRNV LLNVPFVGLT ATATEKVRSD IMNSLLMKDH HVAIGSFDRK
201: NLFYGVKSFS RSSQFVDQLV EEISKYVDNA NSTIVYCTTV KDTEEIFKSL LEAGIKAGIY HGQVANKARE EAHRSFIRDE FYVMVATVAF GMGIDKPNVR
301: YVIHYGCPKS LESYYQESGR CGRDGVPSAC WLYFTRSDFA KADFYSAEAR SASQRKAITE AFSAAQHYCM LSTCRRKYLL DYFADEYAHD DCGIISIESL
401: LSWEHLSYLF

Best Arabidopsis Sequence Match ( AT1G31360.6 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.