Factsheet for Solyc07g042010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41637	Canola	nucleus	30.51	62.57
VIT_11s0016g00850.t01	Wine grape	nucleus	65.69	62.41
Os02t0780800-01	Rice	cytosol	28.76	61.18
KRH37506	Soybean	nucleus	63.21	58.2
AT4G35740.1	Thale cress	nucleus	59.71	57.36
Bra010520.1-P	Field mustard	nucleus	58.25	55.65
CDY64039	Canola	nucleus	58.25	55.65
KXG31219	Sorghum	nucleus	54.89	50.0
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	54.89	48.64
Zm00001d018287_P001	Maize	nucleus	52.26	48.58
TraesCS6B01G371000.2	Wheat	nucleus	53.14	47.83
TraesCS6A01G339900.1	Wheat	nucleus	52.99	47.64
TraesCS6D01G320500.1	Wheat	nucleus	52.99	46.9
Solyc09g018710.2.1	Tomato	cytosol	20.73	34.63
Solyc08g074610.1.1	Tomato	nucleus	23.36	29.09
Solyc01g100280.2.1	Tomato	nucleus	22.77	22.16
Solyc01g099460.1.1	Tomato	nucleus	20.58	16.59
Solyc01g103960.2.1	Tomato	nucleus	24.96	14.49
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	11.09	14.05
Solyc05g014690.1.1	Tomato	nucleus	19.42	13.27
Solyc09g018690.2.1	Tomato	nucleus	6.13	8.28

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0000724	GO:GO:0000733	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310
GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0036310	GO:GO:0043138	GO:GO:0043140
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K4CE65	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710
PANTHER:PTHR13710:SF105	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc07g042010.2
EnsemblPlants:Solyc07g042010.2.1	TIGRFAMs:TIGR00614	UniParc:UPI000276BC0D	SEG:seg	:	:

Description

ATP-dependent DNA helicase Q-like 3 [Source:Projected from Arabidopsis thaliana (AT4G35740) UniProtKB/Swiss-Prot;Acc:Q9FT72]

Coordinates

chr7:-:54852447..54867740

Molecular Weight (calculated)

76017.8 Da

IEP (calculated)

9.095

GRAVY (calculated)

-0.465

Length

685 amino acids

Sequence
(BLAST)

001: MPTGGGKSMC YQVPALTKPG IVLVVSPLIA LMENQVSTLK EKRIPAEFLS STQTVLVKNK IYEDIESGKP AVRLLYVTPE LIATSGFMSK MTKIHARGLL
101: NLIAVDEAHC ISSWGHDFRP SYRKLSSLRS HFPNVPVLAL TATAVPKVQK DVIESLNLQN PLVLKSSFNR PNIYYEVRYK DLLDDPYADV CKLLKSCGNV
201: CAIIYCLERT MCDDLAIHIT SSGISCAAYH AGLNNKMRSS VLDDWISSKT QVVVATVAFG HKQLLKSCFR CRMGIDRKDV RVVCHFNIPK SMEGFYQESG
301: RAGRDQLPSR SVLYYGVDDR RKMEFILNNT KRSKDESSSL QDKSSKKSLD DFKQMVEYCE GSGCRRKMIL ENFGEMVPDS LCEKSCDVCK HPNLVTSNLE
401: QLKTATAFRQ RGGSSRIYMT SGSSLNAGEQ LSEFWNRDDE ASGSEEDISE SDDALDAAKN VASSKTSAKL RLQDKMDLLQ RAEENYYQNK SHDKQVNKLD
501: KNAIPEKLRE AGKQRLLNSI KQNQQMVNDS RIDIDKSVVF LENECYKKYG KSGKSFYLSQ MASTARWLST AGPMELVNKL SSSSTATPPE NVTSIADCSP
601: ASSNISVPIS ARANDEEVHG NAGSQDPIRS PASPLHGSAS AKLPPILSFS QFINSGKAKG NLASASKRQS PDRGKNKLEK RMRFQ

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.