CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0780800-01	Rice	cytosol	67.07	69.57
CDY64039	Canola	nucleus	93.71	43.65
AT4G35740.1	Thale cress	nucleus	91.02	42.64
VIT_11s0016g00850.t01	Wine grape	nucleus	76.95	35.64
KRH37506	Soybean	nucleus	72.46	32.53
Solyc07g042010.2.1	Tomato	nucleus	62.57	30.51
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	70.06	30.27
Zm00001d018287_P001	Maize	nucleus	66.77	30.26
KXG31219	Sorghum	nucleus	67.37	29.92
TraesCS6B01G371000.2	Wheat	nucleus	67.96	29.83
TraesCS6A01G339900.1	Wheat	nucleus	67.96	29.79
TraesCS6D01G320500.1	Wheat	nucleus	67.96	29.33
CDY27743	Canola	nucleus	37.13	20.36
CDY66905	Canola	nucleus	36.83	20.2
CDY12420	Canola	nucleus	38.62	15.58
CDX80626	Canola	golgi, mitochondrion	33.53	14.87
CDY03955	Canola	nucleus	32.63	11.84
CDY40476	Canola	nucleus	39.22	11.63
CDY12873	Canola	nucleus	39.22	11.6
CDY20972	Canola	nucleus	40.12	11.33
CDY15702	Canola	nucleus	32.93	11.32
CDY34669	Canola	nucleus	39.22	11.3
CDY34859	Canola	nucleus	38.32	11.27
CDY20595	Canola	nucleus	39.82	11.22
CDX80633	Canola	nucleus	1.2	1.08
CDX80627	Canola	nucleus	1.2	1.08
CDY27742	Canola	mitochondrion	0.0	0.0
CDX97959	Canola	nucleus	0.0	0.0
CDX89177	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078HUX9	UniProt:A0A078HUX9	EnsemblPlants:CDY41637	ProteinID:CDY41637
ProteinID:CDY41637.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00073296001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	SMART:SM00487	SUPFAM:SSF52540
TIGRFAMs:TIGR00614	UniParc:UPI0004EEE424	:	:	:	:

Description

BnaC03g62470DBnaC03g62470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUX9]

Coordinates

chrLK032502:-:78927..81008

Molecular Weight (calculated)

36887.7 Da

IEP (calculated)

9.071

GRAVY (calculated)

-0.035

Length

334 amino acids

Sequence
(BLAST)

001: MKKSPLPVQN VNRSDKNVSG KEVLVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVRNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHDRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQTDVI ESLSLRNPLV LKSSFNRPNI FYEVRYKDLI DNAYTDLCNL LKSCGNICAI IYCLERTTCD DLSLHLSSTG ISSAAYHAGL NSNLRSTVLD
301: DWLSSKKQVI VATVAFGSWG ARDKRSNGFS TEWV

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.