CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20972	Canola	nucleus	97.47	97.63
CDY34859	Canola	nucleus	85.32	89.0
CDX89177	Canola	nucleus	20.0	88.76
CDX97959	Canola	nucleus	20.0	88.76
CDY34669	Canola	nucleus	86.75	88.7
AT1G10930.1	Thale cress	nucleus	84.89	84.68
KRH00028	Soybean	cytosol	4.64	73.33
CDY40476	Canola	nucleus	64.3	67.67
CDY12873	Canola	nucleus	64.22	67.4
KRH44073	Soybean	nucleus	57.05	58.28
VIT_12s0035g00400.t01	Wine grape	nucleus	56.46	57.82
KRH26366	Soybean	nucleus	56.2	57.81
Solyc01g103960.2.1	Tomato	nucleus	56.29	56.53
GSMUA_Achr6P17780_001	Banana	nucleus	54.09	54.0
Zm00001d015212_P006	Maize	nucleus	48.86	49.28
TraesCS2A01G304900.1	Wheat	nucleus	49.28	48.63
TraesCS2D01G303500.1	Wheat	nucleus	48.95	48.29
TraesCS2B01G321700.1	Wheat	nucleus	48.86	48.21
EES06253	Sorghum	nucleus	47.93	47.53
Os04t0433800-01	Rice	nucleus	48.35	47.36
HORVU2Hr1G075870.8	Barley	nucleus, plastid	21.35	40.68
CDY41637	Canola	nucleus	11.22	39.82
CDY66905	Canola	nucleus	19.24	37.44
CDY27743	Canola	nucleus	19.16	37.27
CDY12420	Canola	nucleus	20.84	29.83
CDY64039	Canola	nucleus	16.2	26.78
CDY03955	Canola	nucleus	15.27	19.65
CDY15702	Canola	nucleus	15.27	18.62
CDX80626	Canola	golgi, mitochondrion	10.55	16.6
CDX80633	Canola	nucleus	4.47	14.32
CDX80627	Canola	nucleus	4.47	14.25
CDY27742	Canola	mitochondrion	0.17	8.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:13.3.6.5.3.1	Gene3D:3.40.50.300	GO:A0A078G249	UniProt:A0A078G249
EnsemblPlants:CDY20595	ProteinID:CDY20595	ProteinID:CDY20595.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0043140	GO:GO:0044237	EnsemblPlantsGene:GSBRNA2T00012763001	InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF09382	PFAM:PF16124	ScanProsite:PS00690
PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RQC_domain
InterPro:RecQ_Zn-bd	SMART:SM00341	SMART:SM00487	SMART:SM00490	SMART:SM00956	SUPFAM:SSF47819
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0004EF0994	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

BnaC08g14630DBnaC08g14630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G249]

Coordinates

chrLK032110:+:68939..75407

Molecular Weight (calculated)

132629.0 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.524

Length

1185 amino acids

Sequence
(BLAST)

0001: MINSNQVSRS HLPEVEKPKG PQTNWSDHAN ALEDPSSRTK HLSSGFLYAI ESQKPRKSRD MAARSIAFPS VNAHTLAHPQ IAKAWSALSS LSLNKTYLRP
0101: GITPPVDDGG TNGSYSARER STVKVTCSTD GSFYSNNQQN QSQMGVPGTG RNFHSFPPPV PGDGKIFAEK FPRINDEARE PETSSAHLNG VEKPFRSSAF
0201: AAEQLGSGEA CLDEIDDDIL QNIDVDQIMM EHYQSTSTPP PSVSSLPSRA PPVDRSASRR EEESCLPPEL CSNCSHGIKL GLCPEASTHL EQMKNMLIAI
0301: SNELLDDDTD LSPDRIQELR QERLLLKKQI QQLEDHTRDK EKHKSQFLSS TATRASQYET PKSTNLRFDH PQTDSRAHFN EQGRYASDSW NMPKDSSFSV
0401: DRYGLSSAPV EREQYVPRII EVTYTEGSND QKWSSRDFPW TRKLEVSNKK VFGNHSFRPN QREIINATMS GSDVFVLMPT GGGKSLTYQL PALICQGITL
0501: VISPLVSLIQ DQIMNLLQAN IPAASLSAGM EWSEQLKIFQ ELCSEHSKYK LLYVTPEKVA QSDSLLRHLD NLNSCGLLAR FVIDEAHCVS QWGHDFRPDY
0601: QSLGILKQKF PNIPVLALTA TATASVKEDV VQALGLVNCV VFRQSFNRPN LLYSVVPKTK KCLEDIDKFI KENHFDECGI IYCLSRNDCE KVAQKLQEFG
0701: HKAAFYHGSI EPTQRALVQK QWSKDEVNII CATVAFGMGI NKPDVRFVIH HSLPKSIEGY HQECGRAGRD GQRASCVLYY GYGDYIRVKH MISQVGVDQS
0801: PMANGYNRVA SSGRLLETNT ENLLRMVRYC ENEVDCRRFL QLVHFGEKFD STNCKRTCDN CSSSQSLIDK DVTLITRQLV ELVKQTGERF SSSHILEVYR
0901: GSLNQMVKKH RHETLQFHGA GKHLTKLEVS RILHYLVTED ILVEDVRKSD MYGSVSSLLK VNKSKAASLF SGSQTIMMRF PSSVKVLKPC KAAPTPAKAP
1001: LVSADAPPED VNLSAIMYTA LRKLRTLLVK EAPDGVMAYH IFGNATLQQM SKKIPRTKEE LLEINGLGKA KVLKYGERLL ETIESTVNEY YGTSKKEESM
1101: ISPDSGKRRR DENISPNVTE EDDDFAESSS QSCKKTVRSK SSEVLHGECV DGGGVGMVME KLDFDFDFED EDGSEIRPEG RVLPW

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.