CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97959	Canola	nucleus	100.0	100.0
CDY34859	Canola	nucleus	100.0	23.5
CDY34669	Canola	nucleus	97.75	22.52
CDY20972	Canola	nucleus	88.76	20.03
CDY20595	Canola	nucleus	88.76	20.0
CDY40476	Canola	nucleus	56.55	13.41
CDY12873	Canola	nucleus	56.18	13.29
Solyc09g018690.2.1	Tomato	nucleus	16.85	8.88
KRH58739	Soybean	cytosol	4.49	6.9
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	3.75	4.95
CDY12420	Canola	nucleus	13.48	4.35
CDX80633	Canola	nucleus	5.24	3.78
CDX80627	Canola	nucleus	5.24	3.76
CDY64039	Canola	nucleus	4.12	1.53
CDY03955	Canola	nucleus	4.87	1.41
HORVU2Hr1G084110.2	Barley	plastid	4.49	1.26
CDY15702	Canola	nucleus	4.49	1.23
Os04t0486800-01	Rice	nucleus	4.12	1.19
TraesCS2B01G363700.1	Wheat	nucleus	4.12	1.19
TraesCS2A01G345300.1	Wheat	nucleus	4.12	1.18
TraesCS2D01G344000.2	Wheat	nucleus	4.12	1.17
Zm00001d025722_P002	Maize	nucleus	3.75	1.08
EES12342	Sorghum	plastid	3.75	1.04
CDY66905	Canola	nucleus	0.37	0.16
CDY27743	Canola	nucleus	0.37	0.16
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	0.0	0.0
OQU81827	Sorghum	cytosol, extracellular	0.0	0.0
CDY41637	Canola	nucleus	0.0	0.0
CDY27742	Canola	mitochondrion	0.0	0.0
CDX80626	Canola	golgi, mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:35.1	GO:A0A078DJV6	EnsemblPlants:CDX89177	ProteinID:CDX89177
ProteinID:CDX89177.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0043140	GO:GO:0044237	EnsemblPlantsGene:GSBRNA2T00149337001	InterPro:HRDC-like_sf	InterPro:HRDC_dom
InterPro:IPR002121	InterPro:IPR036388	PFAM:PF00570	PFAM:PF09382	PFscan:PS50967	InterPro:RQC_domain
SMART:SM00341	SMART:SM00956	SUPFAM:SSF46785	SUPFAM:SSF47819	UniParc:UPI0004EEF7DE	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaA04g00090D

Coordinates

chrLK031857:-:1591993..1593426

Molecular Weight (calculated)

29839.6 Da

IEP (calculated)

7.079

GRAVY (calculated)

-0.555

Length

267 amino acids

Sequence
(BLAST)

001: MEVKKHRHET LQFHGAGKQL SKIEVSRILH YLVTEDILVE DVRKSDMYGS VSSLLKVNNA KAASLFSGSQ TIMMRFPSSV KVLKTTKPAP TPAKAPVTSA
101: DTPPEDLNLS AIMYTALRKL RTLLVKEAPD GVMAYHIFGN ATLQQISKKI PRTKEELLEI NGLGKAKVTK YGDRLLETIE TTVNEYYGTS NKDSMISPDT
201: GKRRRDENTS PNVADDDDDF AEMSIQSCKK TARNKSNEIG MVVEKLDFDF EDEDGSEIRP EGRVLPW

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.