Factsheet for Os04t0486800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025722_P002	Maize	nucleus	79.91	79.74
TraesCS2B01G363700.1	Wheat	nucleus	79.48	79.31
TraesCS2A01G345300.1	Wheat	nucleus	79.81	79.29
TraesCS2D01G344000.2	Wheat	nucleus	79.81	78.7
EES12342	Sorghum	plastid	81.75	78.36
HORVU2Hr1G084110.2	Barley	plastid	73.76	71.97
OQU81827	Sorghum	cytosol, extracellular	13.5	69.83
VIT_01s0010g02590.t01	Wine grape	mitochondrion	46.11	62.06
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	32.51	61.81
KRH58739	Soybean	cytosol	11.02	58.62
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	12.63	57.92
KRH42637	Soybean	nucleus	51.08	52.32
AT1G27880.1	Thale cress	nucleus	49.57	50.38
CDY03955	Canola	nucleus	49.46	49.73
Solyc05g014690.1.1	Tomato	nucleus	52.27	48.3
Bra030065.1-P	Field mustard	nucleus	50.22	47.84
CDY15702	Canola	nucleus	50.22	47.84
Os02t0780800-01	Rice	cytosol	12.1	34.78
Os11t0672700-01	Rice	nucleus	17.6	27.72
Os11t0708600-02	Rice	nucleus	15.23	26.96
Os07t0681600-01	Rice	nucleus	15.98	16.7
Os05t0150600-02	Rice	nucleus	15.01	16.47
Os04t0433800-01	Rice	nucleus	18.03	13.8
Solyc09g018690.2.1	Tomato	nucleus	2.38	4.34
CDX97959	Canola	nucleus	1.19	4.12
CDX89177	Canola	nucleus	1.19	4.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4336217	UniProt:B9FFT7	ProteinID:BAS89800.1	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA_helicase_ATP-dep_RecQ	ProteinID:EEE61221.1	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006284	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009378	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0009991	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042631
GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os04g0486800
EnsemblPlants:Os04t0486800-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR13710	PANTHER:PTHR13710:SF108	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614
UniParc:UPI00018F0798	RefSeq:XP_015635624.1	SEG:seg	:	:	:

Description

DEAD-Box HelicaseSimilar to predicted protein. (Os04t0486800-01)

Coordinates

chr4:+:24312618..24319681

Molecular Weight (calculated)

101908.0 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.284

Length

926 amino acids

Sequence
(BLAST)

001: MYSPPHAADS DSEGSLLSDV SASPPRRRSP PRPAPPPPPP PPPPKHRTRP AAPTKPKLKP TPPAASAPAP APPPPPTLRA AALSDPHGLA ARIAAGSALT
101: AASGTASSSS FRRLVQSRNP SFDPATAFTA PASSAPSEVP SAAPRPPPTA ATDAPPQTRP KRVHPNSVSE VAAASAAAEQ PKRARGGSEG NFVRLNINGY
201: GRRRTFKNSQ AKRSTKCRSW RRQRAAGATP RSQGDEEGDL VAEALLEREK QAASDSVLEA VESVREDPSE QNLKSLLNAA YGHDSFRQGQ LEAIQQIVAG
301: ESTMLVLPTG AGKSLCYQVP AMILPGLTLV VSPLLSLMVD QLRKLPAFLP GGLLASSQTS DEFHDTLQRL RAGEIKVLFV SPERFLNEEF LLIFRDTLPI
401: SLVAIDEAHC ISEWSHNFRP SYLRLRASLL RRKLNVQCIL AMTATATTQT LEEIMNALEI PSDNLIQTSQ IRENLQLSIS TSDNRLKDLM LLLKSPPFVD
501: MRSIIVYCKF QAETDFVSKY LCDNNITAKS YHSGLLIKNR SRVQELFCSN KIRVVVATVA FGMGLDKSDV EGVIHYSLPE SLEEYIQETG RAGRDGRLSH
601: CHLLLDSATF YKIRSLSHSD GVDGYAMSKF LYQIFSSENT TGCICSLAKE LTSRKFDIKE EVLLTILTQL EIGDQQYIRL LPQFSVTCTL YFHKTSPQLL
701: ADKDILIRSV LNRSEMKDGH YVFDIPRIAN DLKITMNEVF DHLHKLKFSG EISFELKDPA YCYVILWRPD DFNALSANLT KWLSEVESSK ISKLDAMFAL
801: ANFAVKGCKR TGGCSGSQHT PCIQKKIMEY FSKDDGTSEN DCRTQLQKSS PFLQADIKVF IQSNSFAKFT PRAVARIMHG ISSPAFPSVT WSKNHFWGRY
901: VEVDFPLVME AAKAELVKLV GKGEQC

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.