Factsheet for Os11t0672700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 16730655
plastid: 16730655

gfp PMID: 16730655 doi

A Saotome, S Kimura, Y Mori, Y Uchiyama, K Morohashi, K Sakaguchi

Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda-shi, Chiba-ken, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	53.4	74.76
TraesCS4D01G144400.2	Wheat	nucleus	78.57	74.4
TraesCS4A01G170100.1	Wheat	nucleus	78.23	74.07
EES10228	Sorghum	nucleus	77.72	73.24
TraesCS4B01G126600.1	Wheat	nucleus	75.34	72.03
HORVU4Hr1G032190.1	Barley	nucleus	77.55	71.14
Zm00001d048672_P001	Maize	nucleus	75.51	70.48
KRH42322	Soybean	cytosol, nucleus, plastid	16.16	62.91
VIT_14s0060g01440.t01	Wine grape	nucleus	64.63	60.8
CDY27743	Canola	nucleus	62.24	60.1
AT3G05740.1	Thale cress	nucleus	61.56	59.74
CDY66905	Canola	nucleus	61.73	59.61
KRH33841	Soybean	nucleus	61.73	59.51
PGSC0003DMT400007294	Potato	nucleus	45.92	59.34
Bra039413.1-P	Field mustard	nucleus	59.18	57.05
Solyc01g100280.2.1	Tomato	nucleus	60.2	50.28
Os02t0780800-01	Rice	cytosol	23.13	42.24
Os11t0708600-02	Rice	nucleus	31.12	34.99
KRH42323	Soybean	cytosol	18.2	33.23
Os05t0150600-02	Rice	nucleus	26.7	18.6
Os04t0433800-01	Rice	nucleus	36.9	17.93
Os04t0486800-01	Rice	nucleus	27.72	17.6
Os07t0681600-01	Rice	nucleus	25.68	17.04
CDY27742	Canola	mitochondrion	0.51	12.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4351098	ProteinID:ABA95269.1	ProteinID:BAF28799.1	ProteinID:BAT15208.1
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	ProteinID:EAZ10300.1	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlantsGene:Os11g0672700	EnsemblPlants:Os11t0672700-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	UniProt:Q2QZT4
InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0000681C9F
RefSeq:XP_015616587.1	SEG:seg	:	:	:	:

Description

-RecQ DNA helicase, RNA silencing (Os11t0672700-01)

Coordinates

chr11:-:27179323..27184026

Molecular Weight (calculated)

65722.6 Da

IEP (calculated)

8.123

GRAVY (calculated)

-0.359

Length

588 amino acids

Sequence
(BLAST)

001: MAGYEREKKR LLDLAADSGF ERDLAADCLD RIVRLYGEGG QGFITVENCG DDFLGALADA TNNNDDWDDL NAIENEACGN LNGMMKHGVI DDKEVEVRTP
101: LFRQAESSAR QTRINLDSFG FSSDDDFETL ESHCDRSVST QKKVNRGNNR CESSTSTSNR ETLSYQQLYS LDDINFANVV IFGNKSFRPL QYEACRAAVS
201: NMDTFVLMPT GGGKSLCYQL PATLHPGVTV VVCPLLSLIE DQIVALNFKF AIPAAFLNSQ QTPSQSSAVI QELRSGKPSF KLLYVTPERM AGNSSFIGIL
301: IGLHQRGLLA RFVIDEAHCV SQWGHDFRPD YRGLGCLKQN FPRVPIMALT ATATASVCKD ILSTLRIPNA TVLKRSFDRT NLNYEVIGKT KTPQKQLGDL
401: LKERFMNMSG IVYCLSKNEC ADTAKFLREK YKIKCAHYHA GLAARQRSNV QGKWHSGEVK VICATIAFGM GIDKPDVRFV IHNTMSKSIE SYYQESGRAG
501: RDNLPAHCIV LYQKKDLGRI VCMLRNSGNF KSESFKVAME QAKKMQTYCE LKTECRRQTL LGHFGEQYDR QRCKHGCSPC DNCIKIPS

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.