Factsheet for VIT_14s0060g01440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	51.2	76.19
KRH33841	Soybean	nucleus	70.08	71.8
PGSC0003DMT400007294	Potato	nucleus	49.12	67.47
AT3G05740.1	Thale cress	nucleus	64.64	66.67
CDY66905	Canola	nucleus	64.96	66.67
CDY27743	Canola	nucleus	64.48	66.17
Os11t0672700-01	Rice	nucleus	60.8	64.63
Bra039413.1-P	Field mustard	nucleus	62.08	63.61
TraesCS4A01G170100.1	Wheat	nucleus	60.32	60.71
TraesCS4D01G144400.2	Wheat	nucleus	60.32	60.71
Solyc01g100280.2.1	Tomato	nucleus	68.16	60.51
EES10228	Sorghum	nucleus	58.72	58.81
TraesCS4B01G126600.1	Wheat	nucleus	57.6	58.54
HORVU4Hr1G032190.1	Barley	nucleus	59.52	58.03
Zm00001d048672_P001	Maize	nucleus	57.44	56.98
VIT_02s0087g00070.t01	Wine grape	nucleus	29.92	25.03
VIT_11s0016g00850.t01	Wine grape	nucleus	27.68	23.99
VIT_06s0004g08420.t01	Wine grape	nucleus	19.84	22.71
VIT_01s0010g02590.t01	Wine grape	mitochondrion	22.72	20.64
VIT_12s0035g00400.t01	Wine grape	nucleus	34.56	18.67
CDY27742	Canola	mitochondrion	0.64	16.0

Protein Annotations

EntrezGene:100252922	wikigene:100252922	Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM483039	ProteinID:CAN73069
ProteinID:CAN73069.1	ProteinID:CCB61902	ProteinID:CCB61902.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ
UniProt:F6I4R5	EMBL:FN596746	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009378	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042631	GO:GO:0043140	GO:GO:0070417
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100252922	wikigene:LOC100252922
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002108BB4	ArrayExpress:VIT_14s0060g01440	EnsemblPlantsGene:VIT_14s0060g01440	EnsemblPlants:VIT_14s0060g01440.t01
RefSeq:XP_002282715	RefSeq:XP_002282715.1	RefSeq:XP_010659681.1	SEG:seg	:	:

Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:F6I4R5]

Coordinates

chr14:-:1129453..1135814

Molecular Weight (calculated)

69911.2 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.353

Length

625 amino acids

Sequence
(BLAST)

001: MDGHDLEMEK ARLLSLALDF GFDEESAMKC LDRLVHLYGD DGQDFITVEH CGDDFLAALV ESVEDSEDWD DLQAIETEAC GTLNDMFDND VLHGYGSDYG
101: IYREGYINAT EYSYEPQKHQ NFVQLDSSSD SEDSSFRILD KKGAAPTSPS WPDGSSSAFT QSSIKHASRS VDSKISVIQG SVSSISNKRA RSQMSEDENG
201: TLSYEALLDL DDFELANVVI FGNRTFRPLQ HQACKASVTK RDCFVLMPTG GGKSLCYQLP ATLQPGVTVV VCPLLSLIQD QIITLNLNFG IPATFLSSQQ
301: TASQAAAVLK ELRKDKPSCK LLYVTPERIA GNSTFFEILK SLHWKGQLAG FVVDEAHCVS QWGHDFRPDY RELGCLKQNF PDVPVMALTA TATQPVRKDI
401: LNSLRIPHAL VLETSFDRSN LKYEVIGKTK EPLKQLGQLL KDRFKNLCGI VYCLSKSECA EVSKFLNGKC KIKTVYYHAG LSARQRIDVQ KKWHTGKVHI
501: ICATIAFGMG INKPNVRFVI HNTMSKSIEN YYQESGRAGR DDLPAVCMAL YQKKDFSRVV CMLRNGHGCK SETFKEAMTQ ARKMQQYCEL KTECRRQTLL
601: EHFGESLDRK ACKNGCNPCD NCLKT

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.