Factsheet for VIT_11s0016g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41637	Canola	nucleus	35.64	76.95
Os02t0780800-01	Rice	cytosol	32.04	71.74
KRH37506	Soybean	nucleus	69.76	67.61
Solyc07g042010.2.1	Tomato	nucleus	62.41	65.69
AT4G35740.1	Thale cress	nucleus	62.27	62.97
Bra010520.1-P	Field mustard	nucleus	62.27	62.62
CDY64039	Canola	nucleus	62.27	62.62
KXG31219	Sorghum	nucleus	58.53	56.12
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	60.06	56.02
TraesCS6B01G371000.2	Wheat	nucleus	58.11	55.06
Zm00001d018287_P001	Maize	nucleus	55.62	54.41
TraesCS6A01G339900.1	Wheat	nucleus	57.28	54.2
TraesCS6D01G320500.1	Wheat	nucleus	57.56	53.62
VIT_14s0060g01440.t01	Wine grape	nucleus	23.99	27.68
VIT_06s0004g08420.t01	Wine grape	nucleus	18.72	24.73
VIT_02s0087g00070.t01	Wine grape	nucleus	25.1	24.23
VIT_01s0010g02590.t01	Wine grape	mitochondrion	20.39	21.37
VIT_12s0035g00400.t01	Wine grape	nucleus	26.91	16.77

Protein Annotations

EntrezGene:100242171	wikigene:100242171	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB51386	ProteinID:CCB51386.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	UniProt:F6HGS2	EMBL:FN595756	GO:GO:0000166
GO:GO:0000724	GO:GO:0000733	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310
GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0036310	GO:GO:0043138	GO:GO:0043140
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100242171	wikigene:LOC100242171
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
TIGRFAMs:TIGR00614	UniParc:UPI0002107F57	ArrayExpress:VIT_11s0016g00850	EnsemblPlantsGene:VIT_11s0016g00850	EnsemblPlants:VIT_11s0016g00850.t01	RefSeq:XP_002277754
RefSeq:XP_002277754.1	SEG:seg	:	:	:	:

Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:F6HGS2]

Coordinates

chr11:+:763359..771416

Molecular Weight (calculated)

80241.0 Da

IEP (calculated)

9.130

GRAVY (calculated)

-0.447

Length

721 amino acids

Sequence
(BLAST)

001: MKKSPLPVQS VSGTEKKVCG KEALVKLLRW HFGHAEFRGR QLEAIEAILS GRDCFCLMPT GGGKSMCYQI PALAKPGIVL VVCPLIALME NQVMALKEKG
101: IAAEFLSSTQ TTKVRDKIHE DLQSGKPSLR LLYVTPELIA TPGFMSRLTK IHARGLLNLI AIDEAHCISS WGHDFRPSYR KLSSLRNHLP DVPILALTAT
201: AVPKVQKDVI ESLCLQNPLV LKSSFNRPNI YYEVRYKDLL DDVYADLSKL LKSCGNVCGI VYCLERTTCD ELSAHLSKNG ISSAAYHAGL NNKLRSSVLD
301: DWISSKIQVV GIDRKDVRIV CHFNIPKSME AFYQESGRAG RDQLPSRSLL YYGIDDRKRM EFILSNAESK KLQSSSSQDG MSKKSLADFS HMVEYCEGSS
401: CRRKKILENF GEQVAASICR KSCDACKHPN LVAKYLEEFA SACALRQNNV FSRIFISSSS DLVDKEQLTE FWNRDDEVSG SEEDISDSDD GIEVGKSMAR
501: PKLPSKSGLS EKIELLQRAE ENYYQNKFPD KQINKPDKNA ISEALRETSK QRLLNALKQT QQRLGNLEIN LETSAIFLEN ECYKKYGKTG KSFYYSQVAS
601: TVRWLSTANS TDLTNRLGTK TSSATDNIIS KADSPIISSS DQGPTKISNA EHCSAKPQTS SCASPMQGAS SQDKGLPPIP SLSDFVKSRT VKGHQANPLS
701: KLRKQSPKRA ERNLEKRSRL Q

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.