CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41637	Canola	nucleus	32.53	72.46
Os02t0780800-01	Rice	cytosol	30.51	70.5
VIT_11s0016g00850.t01	Wine grape	nucleus	67.61	69.76
Solyc07g042010.2.1	Tomato	nucleus	58.2	63.21
AT4G35740.1	Thale cress	nucleus	60.08	62.69
Bra010520.1-P	Field mustard	nucleus	60.22	62.48
CDY64039	Canola	nucleus	60.22	62.48
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	56.59	54.46
KXG31219	Sorghum	nucleus	54.17	53.59
TraesCS6A01G339900.1	Wheat	nucleus	54.7	53.41
TraesCS6B01G371000.2	Wheat	nucleus	54.57	53.35
Zm00001d018287_P001	Maize	nucleus	52.28	52.78
TraesCS6D01G320500.1	Wheat	nucleus	54.7	52.58
KRH00028	Soybean	cytosol	4.17	41.33
KRH42322	Soybean	cytosol, nucleus, plastid	7.12	35.1
KRH33841	Soybean	nucleus	22.85	27.87
KRH39703	Soybean	nucleus	24.33	26.04
KRH42323	Soybean	cytosol	10.35	23.91
KRH30702	Soybean	nucleus	24.87	21.24
KRG98073	Soybean	nucleus	25.94	20.98
KRG92892	Soybean	nucleus	20.83	18.15
KRH42637	Soybean	nucleus	20.83	17.15
KRH26366	Soybean	nucleus	26.34	17.01
KRH44073	Soybean	nucleus	26.48	16.98
KRH58739	Soybean	cytosol	2.15	9.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0I8N6	EMBL:ACUP02005457	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA_helicase_ATP-dep_RecQ	EnsemblPlantsGene:GLYMA_09G070600	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0036310
GO:GO:0043138	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlants:KRH37506	ProteinID:KRH37506	ProteinID:KRH37506.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF16124	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RecQ_Zn-bd
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0006EDE5E6	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:7198816..7212262

Molecular Weight (calculated)

83159.3 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.428

Length

744 amino acids

Sequence
(BLAST)

001: MQKSALPLSD ANANKKREEL RRKETLVKLL RWHFGYPDFR DMQLDAIQAV LSGKDCFCLM PTGGGKSMCY QIPALAKAGI VLVVCPLIAL MENQVMALKE
101: KGIAAEFLSS TKTTDAKVKI HEDLDSGKPS TRLLYVTPEL ITTPGFMTKL TKIYTRGLLN LIAIDEAHCI SSWGHDFRPS YRKLSSLRSH LPDVPILALT
201: ATAVPKVQKD VVESLQMQNP LMLKSSFNRP NIYYEVRYKD LLDDAYADLS NTLKSLGDVC AIVYCLERSM CDDLSTNLSQ NGISCAAYHA GLNNKMRTSV
301: LDDWISSKIK VVVATVAFGL WSSFRMGIDR KDVRIVCHFN IPKSMEAFYQ ESGRAGRDQL PSRSLLYYGV DDRKRMEFIL RKSVSKKSQS SSSQEESSKM
401: SLIAFNLMVE YCEGSGCRRK RVLESFGEQV TASLCGKTCD GCRHPNLVAR YLEDLTTACA LRQKNGSSRV FMTSSTDAIN GEQLSEFWNQ DEEASGSEED
501: ISDSDGNGNE VVNNLTRSKL QSKLGVSEKL AMLQRAEENF YRNNNAYKQS NKVDKNAISD PMRGSSRQRL QNALKQVQQR LDNFKIEMET SASFLEEECY
601: KKYGKVGKSF YYSQVASTVR WLTTASSSEL INRLSAINAS TSMNVLSEAE NLLIPANQPL TPAEQPLTSP PALDPYARDT SNEHSGTARS ETSACVLPME
701: GSFSTNLPQI PSFSEFVNSR KAKGDQLHDT KRHSSRVEKK MRIQ

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.