CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58739	Soybean	cytosol	18.47	95.98
VIT_01s0010g02590.t01	Wine grape	mitochondrion	53.98	70.93
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	30.97	57.49
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	12.39	55.45
AT1G27880.1	Thale cress	nucleus	54.98	54.56
CDY03955	Canola	nucleus	55.42	54.4
Solyc05g014690.1.1	Tomato	nucleus	58.19	52.49
Zm00001d025722_P002	Maize	nucleus	53.32	51.94
Bra030065.1-P	Field mustard	nucleus	55.64	51.75
CDY15702	Canola	nucleus	55.64	51.75
Os04t0486800-01	Rice	nucleus	52.32	51.08
TraesCS2B01G363700.1	Wheat	nucleus	52.1	50.75
EES12342	Sorghum	plastid	53.87	50.41
TraesCS2A01G345300.1	Wheat	nucleus	51.88	50.32
TraesCS2D01G344000.2	Wheat	nucleus	52.21	50.27
OQU81827	Sorghum	cytosol, extracellular	9.85	49.72
HORVU2Hr1G084110.2	Barley	plastid	49.89	47.52
KRH00028	Soybean	cytosol	2.65	32.0
KRH42322	Soybean	cytosol, nucleus, plastid	4.87	29.14
KRH33841	Soybean	nucleus	17.15	25.41
KRH39703	Soybean	nucleus	16.7	21.73
KRH37506	Soybean	nucleus	17.15	20.83
KRH42323	Soybean	cytosol	6.75	18.94
KRG92892	Soybean	nucleus	16.15	17.1
KRH30702	Soybean	nucleus	15.38	15.96
KRH26366	Soybean	nucleus	19.58	15.36
KRG98073	Soybean	nucleus	15.6	15.33
KRH44073	Soybean	nucleus	19.58	15.26

Protein Annotations

EntrezGene:100811214	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004822	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	EnsemblPlantsGene:GLYMA_08G102300	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009378	GO:GO:0009605
GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0042631	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KRZ4	InterPro:IPR001650
InterPro:IPR014001	EnsemblPlants:KRH42637	ProteinID:KRH42637	ProteinID:KRH42637.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF108
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002955A53	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:7851480..7859621

Molecular Weight (calculated)

100743.0 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.300

Length

904 amino acids

Sequence
(BLAST)

001: MESDSDSDGS HISATPPRKS TPSPPPPPPV VVSKKSRIRI KPSKSKPKPD PSGSSKTQSK SDPIQQATLL SLPTDLPFQI RRPSDAPSIS YSIETLPAGY
101: FSSSHSASFS KIRRPLLNLE PSEVEQPVFT SGASDSRAEG ADLRKRGKSQ LPNLIGSSAP MPSVKPRTSG AGEGNFVKLN MNGKRKKFLN KRGKFGGKRY
201: KSWRFKSQRE KEEEQEEAVG ELKQRGGCKR REIDGDAVEE AATAARKEPS EENLVKLLRL VHGYDCFRDG QVEAIKMVLA GKSSVVVLPT GAGKSLCYQL
301: PAVILPGVTL VVSPLVALMI DQLRQLPHVI MGGLLSSTQT PEEASESLKQ LRQGGIKVLF VSPERFLNEE FLSTISSLPA ISLVVIDEAH CISEWSHNFR
401: PSFMRLRASL LHKTLNVRSV LAMTATATTT TLDAIMSALD IPSTNLIQKA QLRDNFHLSV SLVRNRMKDL LNLIKSPPFV EVQSMIIYCK FQYETDQINR
501: YLNDNNILAK SYHSGISAKE RSYVQELFNS NKIRVVVATV AFGMGLDKRD VGAVIHYSLP ESLEEYVQEI GRAGRDGRLS YCHLFYDDET YFKLRSLTHS
601: EGVDEYAVNK FLREVFPADK NSCGKICSLI KESASRRFDM KEEVMLTLLT RLELGDVQYL QLHPQINVTG TLNFHKSPPP LLAQKVSAIA VILKRSETKH
701: GQYIFDIPTV ANDMGVTAVE LINQLYDLKL MGEITYEMKD LAYCYRIIEV PTDLLSLSAD ITRWLSEVEN CKVRKMDAMF NAAYFALNLC DTMQGCSGAN
801: HTPCLQRKIL DYFSGVDNAD FCKKIGQSSP FLRADIKVFL QSNSQARFTP RAVARVMHGI ASPAYPSTAW SKTHFWGRYT HIDFQVVMEA AKEELKNFVG
901: KDTL

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.