Factsheet for Solyc05g014690.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g02590.t01	Wine grape	mitochondrion	48.4	70.49
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	28.54	58.73
KRH42637	Soybean	nucleus	52.49	58.19
AT1G27880.1	Thale cress	nucleus	49.7	54.67
CDY03955	Canola	nucleus	50.1	54.51
Os04t0486800-01	Rice	nucleus	48.3	52.27
TraesCS2B01G363700.1	Wheat	nucleus	48.0	51.83
TraesCS2A01G345300.1	Wheat	nucleus	48.1	51.72
Bra030065.1-P	Field mustard	nucleus	50.0	51.54
CDY15702	Canola	nucleus	50.0	51.54
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	10.38	51.49
Zm00001d025722_P002	Maize	nucleus	47.51	51.29
TraesCS2D01G344000.2	Wheat	nucleus	47.7	50.91
OQU81827	Sorghum	cytosol, extracellular	9.08	50.84
EES12342	Sorghum	plastid	47.8	49.59
HORVU2Hr1G084110.2	Barley	plastid	45.61	48.16
Solyc09g018710.2.1	Tomato	cytosol	12.87	31.46
Solyc08g074610.1.1	Tomato	nucleus	13.77	25.09
Solyc01g100280.2.1	Tomato	nucleus	14.87	21.16
Solyc07g042010.2.1	Tomato	nucleus	13.27	19.42
Solyc01g099460.1.1	Tomato	nucleus	14.57	17.18
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	8.68	16.08
Solyc01g103960.2.1	Tomato	nucleus	17.86	15.17
Solyc09g018690.2.1	Tomato	nucleus	2.4	4.73

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006310
GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009378	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0042631	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4BYI8	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF108	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc05g014690.1	EnsemblPlants:Solyc05g014690.1.1	TIGRFAMs:TIGR00614	UniParc:UPI00027666B8
SEG:seg	:	:	:	:	:

Description

ATP-dependent DNA helicase Q-like 5 [Source:Projected from Arabidopsis thaliana (AT1G27880) UniProtKB/Swiss-Prot;Acc:Q0WVW7]

Coordinates

chr5:+:8814439..8825664

Molecular Weight (calculated)

111342.0 Da

IEP (calculated)

8.688

GRAVY (calculated)

-0.213

Length

1002 amino acids

Sequence
(BLAST)

0001: MDSDADSDGS HVSSTPPRHP LPPPQFPSRR ALLATAKSRT QPKNTSTISS KFSRPMLRPK ISTKKPKKSK DDTTIQTRQN LSDLPVHIHP NDTVSSEAPP
0101: SGGSCNSKFA SSSKTQETRI QNPSSPPKSS DLPFQIHRSV NAVLSHDNSS GEVLPASGLC LPKFASFLKT RKTILNFEPV EAGSIDPQLV QVNEKEAVDS
0201: CCRAKAVRKY PNLIGSNVSS LSSLPVKKVK CANEGNFVRL NINGYGKKFA SKFKRRNFNS SSGKKFYRRW KKKVRVEGKE GENGLFDEEG LVVEVKGRGE
0301: RLGFDAELIE EAVMGVRNEA SDENLLRLLK LTYGYDSFRD GQLETLKMVL SGKSTMLVLP TGAGKSLCYQ LPAMVLQGVT VVISPLVSLM IDQLKQLPAA
0401: VEGGLLCSSQ TPEEVSETFR LLEEGSIKVL FVSPERFLNS EFLSIFCNTQ ISLVVIDEAH CVSEWSHNFR PSYMRLKASL LRDKLKAQCI LAMTATATTK
0501: ALSHVMHALD IPSTNLIQVV KPRDNLQLSV SSSENRMKDL MTLLKSSPFS EAKSIIIYCK FQSETDFICK YLCDNNILAK SYHSGIFAKD RSRTQELFCA
0601: NKIRVVVATV AFGMGLNKKD IEAVIHYSLP ESLEEYVQEI GRAGRDGRIS YCHLFFDDVS YFKIRSLMYS DGVDEYVVNK LLCQIFSGST TSAGIICSLV
0701: KESACRKFDM KEEVILTILT QLELGEVQYL QLLPQTSVTC TLNFHQTSPA LLAMKDAVVA AILKNSEIKD GQYIFDIPSV ANSIGLQIVD LSNHLQTLKI
0801: KGEVRYELKD QAYCYVIMDT PKDICSLATW LTKWLSEVES CKVRKMDTMY DAAVFATEAC DKVHGCHDHQ HTPCLQRKIT EYFVNGTEVE VPKRIGGSSP
0901: FLTADIKVFL QCNSYAKFTP RAIARILHGI ASPAFPSAVW SRTHFWGRYM QTDFKAITEV AKAELMKLVG KDITGPCSRL KASRCLEADL GSAVDGYISR
1001: EY

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.