Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH00028 | Soybean | cytosol | 4.66 | 73.33 |
| VIT_12s0035g00400.t01 | Wine grape | nucleus | 60.51 | 61.71 |
| KRH26366 | Soybean | nucleus | 59.58 | 61.02 |
| KRH44073 | Soybean | nucleus | 59.83 | 60.86 |
| AT1G10930.1 | Thale cress | nucleus | 57.88 | 57.49 |
| Bra031741.1-P | Field mustard | nucleus | 56.53 | 57.4 |
| CDY34669 | Canola | nucleus | 56.36 | 57.38 |
| CDY34859 | Canola | nucleus | 55.17 | 57.31 |
| CDY20972 | Canola | nucleus | 56.44 | 56.3 |
| CDY20595 | Canola | nucleus | 56.53 | 56.29 |
| GSMUA_Achr6P17780_001 | Banana | nucleus | 56.02 | 55.69 |
| Bra018418.1-P | Field mustard | nucleus | 56.44 | 55.69 |
| Bra027115.1-P | Field mustard | nucleus | 52.54 | 53.49 |
| CDY12873 | Canola | nucleus | 51.1 | 53.41 |
| CDY40476 | Canola | nucleus | 50.93 | 53.37 |
| TraesCS2D01G303500.1 | Wheat | nucleus | 51.1 | 50.21 |
| TraesCS2A01G304900.1 | Wheat | nucleus | 51.1 | 50.21 |
| TraesCS2B01G321700.1 | Wheat | nucleus | 51.02 | 50.12 |
| Os04t0433800-01 | Rice | nucleus | 51.19 | 49.92 |
| Zm00001d015212_P006 | Maize | nucleus | 49.24 | 49.45 |
| EES06253 | Sorghum | nucleus | 49.41 | 48.79 |
| HORVU2Hr1G075870.8 | Barley | nucleus, plastid | 22.29 | 42.28 |
| Solyc08g074610.1.1 | Tomato | nucleus | 18.64 | 40.0 |
| Solyc09g018710.2.1 | Tomato | cytosol | 12.97 | 37.32 |
| Solyc01g100280.2.1 | Tomato | nucleus | 19.07 | 31.96 |
| Solyc07g042010.2.1 | Tomato | nucleus | 14.49 | 24.96 |
| Solyc01g099460.1.1 | Tomato | nucleus | 14.41 | 20.0 |
| Solyc05g014690.1.1 | Tomato | nucleus | 15.17 | 17.86 |
| Solyc02g088430.1.1 | Tomato | extracellular, mitochondrion, plastid, vacuole | 6.69 | 14.6 |
| Solyc09g018690.2.1 | Tomato | nucleus | 4.66 | 10.85 |
Protein Annotations
Description
No Description!
Coordinates
chr1:+:92436883..92448578
Molecular Weight (calculated)
131865.0 Da
IEP (calculated)
7.863
GRAVY (calculated)
-0.548
Length
1180 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSKDKLPKAN WTQHAIAHDN FSCQDKFLSS NILFSLPTQR HCARDEMNAR SVTCHIRSVS KLEAEKAWKL LTSLKLSPKS YTRPGKTPQL TKDTNAFSQH
0101: SNHTQFPRAS DGNCAPARCR PVHQGVGDDG ENSDSRRYAG NCFPPHSSGV AETGNVVNRQ SGVDNSHARG VGEISSSHAN GASKKTREVY TTCADETEED
0201: DILLNIDVDQ IVEHYQTNCT PQPSVSRFPS TTPVTKSQSL AGHEETNLPP ELSINCNHGL QLGLCPGALD HLQEMKDKLI EISNDLLDNV SDLSSEQIEM
0301: LRQERSQLKL QIQHLEKFLQ TVSGNEERKM SQCSASTLTS AFQYETPSAF QYATPSSFPS RINPTRLDTQ FSGYNESSHF DNWNSSSLSF DVTGGNGLST
0401: APVEREPYIP KYLEVNYIDG SNDKKWSCRD FPWTKKLEAN NKKVFGNHSF RPNQREVINA TMSGNDVFVL MPTGGGKSLT YQLPGLICPG ITLVISPLVS
0501: LIQDQIMHLL QVNIPAAYLS SNMEWTEQQE ILRELNSDGC KYKFLYVTPE KVAKSDVLLR HLESLHTRDT LARIVIDEAH CVSQWGHDFR PDYQCLGILK
0601: QKFPTVPVLA LTATATISVK EDVVQALGLA NCIIFRQSFN RPNLRYTVIP KTKKCLEDIG TFIKNNHFDQ CGIIYCLSRM DCERVAEKLQ EYGHKAAFYH
0701: GSMDGAQRAN IQKQWSKDEI NIICATIAFG MGINKPNVRF VIHHSLPKSI EGYHQECGRA GRDGLPSSCV LYYSYSDYIR VKHMISQGTV EQSPFGSGYG
0801: RSNVAASGRN LETNVENLLR MVSYCENEVD CRRLLQLIHF GEKFESTNCR KTCDNCCKTQ NCIEKDVTEV AKQLVELVKT TGQKFSSAHV LEVFRGSLSQ
0901: YVKKHRHESL HLHGAGKKLA KGEASRVLRH LVTEDILVED VKKSDLYGSV SSVLKVNESK AYNLFAGGQT LRLRFPSFVK ASKLGKYEAT PAKGSLTSGK
1001: QSPPRTDPSG VPQSTFDPSL SAILYSALRK LRTNIVRESG DGVMAHHIFG DDTLQLIGQK VPRTKNELLD INGIGKVKIN KYGDNVLQTI EATVRDYYKS
1101: DKTSSSGNDN TDSGKKRRNS INVQNGNSKD EEFFTESTGC TKKRVLKKQN KHAEVIDYRD LGYFDECIDG DLDFDETMMP
0101: SNHTQFPRAS DGNCAPARCR PVHQGVGDDG ENSDSRRYAG NCFPPHSSGV AETGNVVNRQ SGVDNSHARG VGEISSSHAN GASKKTREVY TTCADETEED
0201: DILLNIDVDQ IVEHYQTNCT PQPSVSRFPS TTPVTKSQSL AGHEETNLPP ELSINCNHGL QLGLCPGALD HLQEMKDKLI EISNDLLDNV SDLSSEQIEM
0301: LRQERSQLKL QIQHLEKFLQ TVSGNEERKM SQCSASTLTS AFQYETPSAF QYATPSSFPS RINPTRLDTQ FSGYNESSHF DNWNSSSLSF DVTGGNGLST
0401: APVEREPYIP KYLEVNYIDG SNDKKWSCRD FPWTKKLEAN NKKVFGNHSF RPNQREVINA TMSGNDVFVL MPTGGGKSLT YQLPGLICPG ITLVISPLVS
0501: LIQDQIMHLL QVNIPAAYLS SNMEWTEQQE ILRELNSDGC KYKFLYVTPE KVAKSDVLLR HLESLHTRDT LARIVIDEAH CVSQWGHDFR PDYQCLGILK
0601: QKFPTVPVLA LTATATISVK EDVVQALGLA NCIIFRQSFN RPNLRYTVIP KTKKCLEDIG TFIKNNHFDQ CGIIYCLSRM DCERVAEKLQ EYGHKAAFYH
0701: GSMDGAQRAN IQKQWSKDEI NIICATIAFG MGINKPNVRF VIHHSLPKSI EGYHQECGRA GRDGLPSSCV LYYSYSDYIR VKHMISQGTV EQSPFGSGYG
0801: RSNVAASGRN LETNVENLLR MVSYCENEVD CRRLLQLIHF GEKFESTNCR KTCDNCCKTQ NCIEKDVTEV AKQLVELVKT TGQKFSSAHV LEVFRGSLSQ
0901: YVKKHRHESL HLHGAGKKLA KGEASRVLRH LVTEDILVED VKKSDLYGSV SSVLKVNESK AYNLFAGGQT LRLRFPSFVK ASKLGKYEAT PAKGSLTSGK
1001: QSPPRTDPSG VPQSTFDPSL SAILYSALRK LRTNIVRESG DGVMAHHIFG DDTLQLIGQK VPRTKNELLD INGIGKVKIN KYGDNVLQTI EATVRDYYKS
1101: DKTSSSGNDN TDSGKKRRNS INVQNGNSKD EEFFTESTGC TKKRVLKKQN KHAEVIDYRD LGYFDECIDG DLDFDETMMP
0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
Arabidopsis Description
RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.