Factsheet for GSMUA_Achr6P17780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00028	Soybean	cytosol	4.55	72.0
VIT_12s0035g00400.t01	Wine grape	nucleus	60.49	62.06
KRH44073	Soybean	nucleus	56.7	58.02
KRH26366	Soybean	nucleus	55.94	57.64
CDY34669	Canola	nucleus	55.1	56.43
Solyc01g103960.2.1	Tomato	nucleus	55.69	56.02
Bra031741.1-P	Field mustard	nucleus	54.68	55.85
CDY34859	Canola	nucleus	53.33	55.72
AT1G10930.1	Thale cress	nucleus	54.93	54.88
CDY20972	Canola	nucleus	54.25	54.44
CDY20595	Canola	nucleus	54.0	54.09
TraesCS2A01G304900.1	Wheat	nucleus	54.68	54.04
Bra018418.1-P	Field mustard	nucleus	54.25	53.85
TraesCS2D01G303500.1	Wheat	nucleus	54.42	53.79
TraesCS2B01G321700.1	Wheat	nucleus	54.09	53.46
Zm00001d015212_P006	Maize	nucleus	52.32	52.85
Os04t0433800-01	Rice	nucleus	53.16	52.15
EES06253	Sorghum	nucleus	51.81	51.46
CDY12873	Canola	nucleus	48.27	50.75
Bra027115.1-P	Field mustard	nucleus	49.45	50.65
CDY40476	Canola	nucleus	48.02	50.62
GSMUA_AchrUn_...	Banana	nucleus	16.34	46.19
HORVU2Hr1G075870.8	Barley	nucleus, plastid	23.93	45.66
GSMUA_Achr4P27590_001	Banana	nucleus	22.41	37.31
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	11.46	27.93
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	16.77	25.74
GSMUA_Achr10P...	Banana	nucleus	14.91	19.01
GSMUA_Achr8P06700_001	Banana	nucleus	12.64	18.75
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	1.68	9.9

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:13.3.6.5.3.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950
GO:GO:0006974	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506
GO:GO:0009628	GO:GO:0009719	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0043138	GO:GO:0043140	GO:GO:0044237	GO:GO:0051276	GO:GO:0070417	GO:GO:0071215
EnsemblPlantsGene:GSMUA_Achr6G17780_001	EnsemblPlants:GSMUA_Achr6P17780_001	EnsemblPlants:GSMUA_Achr6T17780_001	InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	UniProt:M0T7X6
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF09382	PFAM:PF16124
ScanProsite:PS00690	PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105
InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00341	SMART:SM00487	SMART:SM00490	SMART:SM00956
SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI00029569E8	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

ATP-dependent DNA helicase Q-like 4A [Source:GMGC_GENE;Acc:GSMUA_Achr6G17780_001]

Coordinates

chr6:+:11952581..11962644

Molecular Weight (calculated)

133586.0 Da

IEP (calculated)

7.710

GRAVY (calculated)

-0.442

Length

1187 amino acids

Sequence
(BLAST)

0001: MSILDLIKSI ACEVHGSERL QLLQVEKAWK ALSSMQLACR NYLIPGLTAP VQNHNKDHLR APFTDSSNNV KNVDTSQVFK GPFHENMPSH VNYSSHSRSF
0101: PQYDSPHYAT DSLLKSTYDK NNNVASEMAQ VTGAQMQSSA THRVIDDHEL VCTAADNLAD DKFLDALDDD EILESIDVDQ IVMEHYQVTA TPEGFMCKQT
0201: PFTPVSSRSC TVIPDENMLP PELHESCIHG SKLALCPEAA IHLQEMKDQL IAVSNELLDN ATELSPPDCE NLRQKRLYLN KKIQLLEKYL CSLNLDEERQ
0301: RSHSMASSTT ARGFGPENPT NKYMIDPIRF NTQVHLRNET GNCMMWSSPA PSHYTDRFDA APLEREVFAP KLQNINYVEG SGDIKWKSLD FPWTKKLEAN
0401: NRKVFGNHSF RPNQREVINA TMSGCDVFVL MPTGGGKSLT YQLPALISPG ITLVVSPLVS LIQDQIMHLL QANIPATYLS ASMEWVEQQE IFRELMSGSC
0501: IYKLLYVTPE KIAKSDVLLR HLDSLHSRGS LARIVIDEAH CVSQWGHDFR PDYQGLGILK QKFPKVPVLA LTATATVSVK EDVVQALGLV NCIVFRQSFN
0601: RPNLWYCVIP KTKKCLEDID KFIKENHFDD CGIIYCLSRM DCEKVAEKLQ NNVKRWKKML EFGHKAAFYH GTMDPLQRSY VQKQWSKDEI NIICATVAFG
0701: MGINKPDVRF VIHHSLPKSI EGYHQECGRA GRDGLRSSCV LYYNYSDYIR VKHMLTQGMI EQSPLASASR RNSFVSNDRV FETNIENLSR MVSYCENETD
0801: CRRLLQLIHF GEKFNPDNCK RTCDNCSKLL TWVEKDVTDI AKQMVELVIS TGKQYSTSHV LEVYRGSLSQ NVKKHRHDNL GLHGAGKHLP KGEASRVIRH
0901: LVVEDILVED VRKSDIYGSI SSVLKVNESK VQRLLSGKQR IILRFPAPAK ASKMNKPEGT PAKGSLPMNT MTYDMGAQST NEIDLNLSVK LYAALRMLRT
1001: ALVKEAGEGV MTYHIFGNAT LQQISKIIPR TKEELLEITG IGKAKVHKYG DRVLETIETT IREYRKTSRN SSSSSNDNAD GTKKRRGSAG SEPGANDDDF
1101: AESTVQSKKR VAKLVNSQNG PADTTSMSAY NGRCIDIDLD GYEMESEDSV PPTRQGPPGR VLPQWLTPAN QINSRIGGLF KEYAFKK

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.