Factsheet for Bra018418.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20972	Canola	nucleus	98.91	100.0
Bra031741.1-P	Field mustard	nucleus	86.79	89.33
AT1G10930.1	Thale cress	nucleus	84.11	84.68
KRH00028	Soybean	cytosol	4.68	74.67
Bra027115.1-P	Field mustard	nucleus	65.72	67.82
KRH44073	Soybean	nucleus	56.77	58.53
KRH26366	Soybean	nucleus	55.94	58.07
VIT_12s0035g00400.t01	Wine grape	nucleus	56.1	57.99
Solyc01g103960.2.1	Tomato	nucleus	55.69	56.44
GSMUA_Achr6P17780_001	Banana	nucleus	53.85	54.25
Zm00001d015212_P006	Maize	nucleus	48.75	49.62
TraesCS2A01G304900.1	Wheat	nucleus	49.41	49.21
TraesCS2D01G303500.1	Wheat	nucleus	49.08	48.88
TraesCS2B01G321700.1	Wheat	nucleus	49.0	48.79
EES06253	Sorghum	nucleus	47.91	47.95
Os04t0433800-01	Rice	nucleus	47.99	47.44
HORVU2Hr1G075870.8	Barley	nucleus, plastid	21.57	41.48
Bra039413.1-P	Field mustard	nucleus	17.89	35.08
Bra038422.1-P	Field mustard	nucleus	20.4	34.61
Bra010520.1-P	Field mustard	nucleus	16.14	26.92
Bra009948.1-P	Field mustard	nucleus	14.38	18.68
Bra030065.1-P	Field mustard	nucleus	14.88	18.31

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:13.3.6.5.3.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra018418	EnsemblPlants:Bra018418.1
EnsemblPlants:Bra018418.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006281
GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	GO:GO:0044237
InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121
InterPro:IPR014001	InterPro:IPR036388	UniProt:M4DPH7	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF00570	PFAM:PF09382	PFAM:PF16124	ScanProsite:PS00690	PFscan:PS50967	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00341
SMART:SM00487	SMART:SM00490	SMART:SM00956	SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614
UniParc:UPI0002547E6B	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

AT1G10930 (E=0.0) ATSGS1, RECQ4A, ATRECQ4A | RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA05:+:8115652..8122277

Molecular Weight (calculated)

134198.0 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.533

Length

1196 amino acids

Sequence
(BLAST)

0001: MINSDQVSRS HLPEVQKPKA PQTNWSEHAN AFEDPSSRTK HLSSGFLYAL ESQKPRKSSD MAARSIAFPS VNAHTLAPPQ IAKAWRALSS LSLNKTYLRP
0101: GITPPVDDGG TNGSYSARER STVKVTCSTD GSFYSNNQQN QSQMGVPGTG RSFHSFPPPV PGDGKNFAEK FRRINDETRE PETSSAHLNG VEKPFKNSTF
0201: AAEQLGSGEA CLDEIDDDIL QNIDVDQIMM EHYQSTSTPP SSVSSLPSRT PPVDRSASRR EEECSLPPEL CSNCSHGIKL GLCPEASTHL EQMKNMLIAI
0301: SNELLDDDTD LSPDRIQELR QERLLLKKQI QQLEDHIRDK EKQKSQFLSS TATRASQYET PKSTNLRFDH PQTDSRAHFN EQGRYASDSW NMPKDSSFSV
0401: DRYGLSSAPV EREQYVPRII EVTYTEGSND QKWSSRDFPW TRKLEVSNKK VFGNHSFRPN QREIINATMS GSDVFVLMPT GGGKSLTYQL PALICQGITL
0501: VISPLVSLIQ DQIMNLLQAN IPATSLSAGM EWSEQLKIFQ ELSSEHSKYK LLYVTPEKVA QSDSLLRHLD NLNSRGLLAR FVIDEAHCVS QWGHDFRPDY
0601: QSLGILKQKF PNIPVLALTA TATASVKEDV VQALGLVNCV VFRQSFNRPN LLYSVVPKTK KCLEDIDKFI KENHFDECGI IYCLSRNDCE KVAQKLQEFG
0701: HKAAFYHGSI EPTQRALVQK QWSKDEVNII CATVAFGMGI NKPDVRFVIH HSLPKSIEGY HQECGRAGRD GQRASCVLYY GYGDYIRVKH MISQVGVEQS
0801: PMANGYNRVA SSGRLLETNT ENLLRMVRYC ENEVDCRRFL QLVHFGEKFD STNCKRTCDN CSSSQSLIDK DVTLITRQLV ELVKQTGERF SSSHILEVYR
0901: GSLNQMVKKH RHETLQFHGA GKHLTKLEVS RILHYLVTED ILVEDVRKSD MYGSVSSLLK VNKSKAASLF SGSQTIMMRF DFVLEIYLSS KRFPSSVKVL
1001: KPCKAAPTPA KAPLVSADAP PEDVNLSAIM YTALRKLRTL LVKEAPDGVM AYHIFGNATL QQMSKKIPRT KEELLEINGL GKAKVLKYGE RLLETIESTV
1101: NEYYGTSKKE ESMISPDSGK RRRDENISPN VTEEDDDFAE SSSQSCKKTV RSKSSEVLHG ECVAGDGVGM VMEKLDFDFE DEDGSEIRPE GRVLPW

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.