Factsheet for HORVU2Hr1G075870.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00028	Soybean	cytosol	6.27	52.0
TraesCS2A01G304900.1	Wheat	nucleus	91.8	47.54
TraesCS2D01G303500.1	Wheat	nucleus	91.32	47.29
TraesCS2B01G321700.1	Wheat	nucleus	91.32	47.29
Zm00001d015212_P006	Maize	nucleus	63.67	33.7
Os04t0433800-01	Rice	nucleus	65.27	33.55
EES06253	Sorghum	nucleus	62.38	32.47
HORVU0Hr1G002110.1	Barley	vacuole	6.43	29.63
HORVU0Hr1G008030.1	Barley	nucleus	15.43	26.82
GSMUA_Achr6P17780_001	Banana	nucleus	45.66	23.93
KRH44073	Soybean	nucleus	41.96	22.5
Solyc01g103960.2.1	Tomato	nucleus	42.28	22.29
KRH26366	Soybean	nucleus	41.16	22.22
Bra027115.1-P	Field mustard	nucleus	40.68	21.83
CDY20972	Canola	nucleus	41.48	21.81
Bra031741.1-P	Field mustard	nucleus	40.68	21.77
AT1G10930.1	Thale cress	nucleus	41.32	21.63
Bra018418.1-P	Field mustard	nucleus	41.48	21.57
CDY34669	Canola	nucleus	40.03	21.48
CDY20595	Canola	nucleus	40.68	21.35
CDY12873	Canola	nucleus	38.75	21.35
CDY40476	Canola	nucleus	38.26	21.14
CDY34859	Canola	nucleus	38.42	21.04
VIT_12s0035g00400.t01	Wine grape	nucleus	37.94	20.4
HORVU4Hr1G032190.1	Barley	nucleus	17.2	16.69
HORVU2Hr1G084110.2	Barley	plastid	11.9	7.8
HORVU1Hr1G021560.16	Barley	nucleus	10.29	7.57

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287IHM7	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU2Hr1G075870	EnsemblPlants:HORVU2Hr1G075870.8
InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00690	PFscan:PS51192
PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000B471397	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:546437411..546445904

Molecular Weight (calculated)

69810.2 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.545

Length

622 amino acids

Sequence
(BLAST)

001: MQGSNKLNAG SNCNDKLPKV NWPHHANAIQ SSLSKGDFLS SSFLFSLPTQ RANPEANCNT MHSLRSAACK IQGPERLQVP WIEKAWRSVC NTQVTCKNYL
101: RPGLSAKVKD CGRDFALTYA ADSSYNAKKL DNVPKSTILS EGSLHQRTES GILEQNSSHR TCTMAYQSNH VVGTTYQSSF ARTDAMSCQT VPVADNMCAD
201: DKLDAMDDDE ILASIDVDRI VMEHYEATNT PRGLASRQMS TPSGNKFNFT GLDENSLPQE LSEICSHGYK LAFCPEANYH LQGMKDQLIS VSNKLLDGSG
301: ELSPQHSEEL RQQRAHLNKQ IQILGDYMAR PTQDDERKRS HSMASTTAAE GHRPPMTPST FVDNNRSQSQ FYDTNGPWDG GSCYTPAPCP YMDSNIPLTS
401: VQRDYTRRNI DISYTDGSGD KKWSSTDFPW TKELEVHNKR VFGNRSFRPN QREIINATMN GSDVFVLMPT GGGKSLTYQL PALIEEGITL VVCPLVSLIQ
501: DQIMHLSQAN IPATYLSANL EWTEQQRILR DLMSPTSTCN YKLLYVTPEK IAKSDVLLRQ LENLYSRGYL SRIVIDEAHC VSQWGQDMIS DLITRYFLSG
601: RYMFMSNKRH PFDIAFVHDL SI

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.