CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26366	Soybean	nucleus	93.02	93.66
KRH00028	Soybean	cytosol	5.6	86.67
VIT_12s0035g00400.t01	Wine grape	nucleus	63.02	63.18
Solyc01g103960.2.1	Tomato	nucleus	60.86	59.83
CDY34669	Canola	nucleus	58.53	58.59
Bra031741.1-P	Field mustard	nucleus	58.36	58.26
CDY34859	Canola	nucleus	56.98	58.19
AT1G10930.1	Thale cress	nucleus	59.14	57.74
CDY20972	Canola	nucleus	58.53	57.4
CDY20595	Canola	nucleus	58.28	57.05
Bra018418.1-P	Field mustard	nucleus	58.53	56.77
GSMUA_Achr6P17780_001	Banana	nucleus	58.02	56.7
CDY40476	Canola	nucleus	53.1	54.71
CDY12873	Canola	nucleus	53.02	54.47
Bra027115.1-P	Field mustard	nucleus	54.14	54.18
TraesCS2A01G304900.1	Wheat	nucleus	53.62	51.79
TraesCS2D01G303500.1	Wheat	nucleus	53.45	51.62
TraesCS2B01G321700.1	Wheat	nucleus	53.28	51.46
Zm00001d015212_P006	Maize	nucleus	51.9	51.23
Os04t0433800-01	Rice	nucleus	52.93	50.74
EES06253	Sorghum	nucleus	51.98	50.46
HORVU2Hr1G075870.8	Barley	nucleus, plastid	22.5	41.96
KRH39703	Soybean	nucleus	22.33	37.27
KRH42322	Soybean	cytosol, nucleus, plastid	4.74	36.42
KRH33841	Soybean	nucleus	18.79	35.74
KRH37506	Soybean	nucleus	16.98	26.48
KRH42323	Soybean	cytosol	7.07	25.47
KRH30702	Soybean	nucleus	17.24	22.96
KRG98073	Soybean	nucleus	17.84	22.5
KRG92892	Soybean	nucleus	14.66	19.91
KRH42637	Soybean	nucleus	15.26	19.58
KRH58739	Soybean	cytosol	1.38	9.2

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	EntrezGene:100800006	MapMan:13.3.6.5.3.1	Gene3D:3.40.50.300	EMBL:ACUP02004908
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	EnsemblPlantsGene:GLYMA_08G188100	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006281	GO:GO:0006310
GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009378
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	GO:GO:0044237
InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KUN5	InterPro:IPR001650
InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	EnsemblPlants:KRH44073	ProteinID:KRH44073	ProteinID:KRH44073.1
ProteinID:KRH44074.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF09382
PFAM:PF16124	ScanProsite:PS00690	PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710
PANTHER:PTHR13710:SF105	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SMART:SM00956
SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002339149	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:15086189..15093880

Molecular Weight (calculated)

129934.0 Da

IEP (calculated)

7.570

GRAVY (calculated)

-0.488

Length

1160 amino acids

Sequence
(BLAST)

0001: MRQGEANSTQ GPKVNLLQHA NALENFSSQA KFLSSTFLFS VPPKKPPHHA EPNPGTAGFV FRRSETIQGS HRVQVEKALT AHSSLQNSSR IYVQLGKTQV
0101: TPQLHEDRRT TSFHGRYEND SRICPDVTVT PIVNNHSSRG LDGLVNNHTN YTGQIIKSSN CMAVDIDDDD DAILANIDVD QIVEEHQSTC TPKPSISKFP
0201: PITPTADKDN FARQGDNVLP PELCLDCIHG YKLGFCPEAA SHLQEMKDNL IAISNELLDN GENLNSTQIA KLRHDRSQLN KQIQQLEKYI HSGNLNEERQ
0301: KSHFSASTAP PTSFVYETPQ QTVLCNGSKR YDTQAYMGNE TYGSSFQSLP SFSVDNCNMP LGSVGREAFI PKIIEVNYIE GSGDKRWSSY DFPWTKELEV
0401: NNKKVFGNHS FRPNQREIIN ASMSGCDVFV LMPTGGGKSL TYQLPALIRP GITLVISPLV SLIQDQIMHL LQANIPAAYL SANMEWAEQQ EILRELNSDY
0501: CKYKLLYVTP EKVARSDNLL RHLDNLHFRE LLARIVIDEA HCVSQWGHDF RPDYQGLGIL KQKFPNTPVL ALTATATASV KEDVVQALGL VNCIIFRQSF
0601: NRPNLWYSVV PKTKKCLEDI DKFIRVNHFD ECGIIYCLSR MDCEKVAEKL QECGHKCAFY HGSMDPAQRA SVQKQWSKDE INIICATVAF GMGINKPDVR
0701: FVIHHSLPKS IEGYHQECGR AGRDGQRSSC ILYYNYSDYI RVKHMLSQGA IEQSSMTSGY NRSNMINSGR ILETNTENLV RMVSYCENDV DCRRLLQLAH
0801: FGEKFNSSTC QKTCDNCLKI TSFIEKDVTE IANQLVELVK LTGQRFSSSH ILEVYRGSLS QMVKKHRHET VSLHGAGKHL AKGEASRILH HLVVEDFLGE
0901: EVKKSDFYGS VSSILKVNEP KVRNLFAGQR IILRFPSSVK ASKPGKSDAT PAKGSLTSEK LNVMQIDPPS PQTEVDHILS AKLYNALRLL RKSLVTEAGE
1001: GVMPHHIFGN ATLLLISKRV PRTKEELLDI NGIGKAKVSK YGDQLLETIE KTVNEHYKLD NIGSGSKGSA DSTKKRRVPN GNSDTNVEDD DAPTKSTGRS
1101: KKRTVKRQNR KGVIYDSPEE DYFQGCPDED LDFDIIEIDA LDQVTCKNTA GRVLPQWTAS

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.