CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42322	Soybean	cytosol, nucleus, plastid	24.84	52.98
GSMUA_AchrUn_...	Banana	nucleus	35.71	27.38
KRH33841	Soybean	nucleus	43.79	23.11
KRH00028	Soybean	cytosol	4.66	20.0
CDY27743	Canola	nucleus	35.71	18.88
AT3G05740.1	Thale cress	nucleus	35.4	18.81
CDY66905	Canola	nucleus	35.4	18.72
Bra039413.1-P	Field mustard	nucleus	35.4	18.69
Os11t0672700-01	Rice	nucleus	33.23	18.2
TraesCS4B01G126600.1	Wheat	nucleus	33.23	17.4
TraesCS4D01G144400.2	Wheat	nucleus	33.23	17.23
TraesCS4A01G170100.1	Wheat	nucleus	32.92	17.07
EES10228	Sorghum	nucleus	32.92	16.99
Zm00001d048672_P001	Maize	nucleus	33.23	16.98
HORVU4Hr1G032190.1	Barley	nucleus	33.23	16.69
KRH39703	Soybean	nucleus	23.6	10.94
KRH37506	Soybean	nucleus	23.91	10.35
KRG92892	Soybean	nucleus	21.43	8.08
KRH26366	Soybean	nucleus	25.78	7.2
KRH44073	Soybean	nucleus	25.47	7.07
KRH42637	Soybean	nucleus	18.94	6.75
KRH30702	Soybean	nucleus	17.7	6.54
KRG98073	Soybean	nucleus	18.63	6.52
KRH58739	Soybean	cytosol	0.0	0.0
CDY27742	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004798	EnsemblPlantsGene:GLYMA_08G083500	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	UniProt:I1KRE7	EnsemblPlants:KRH42323	ProteinID:KRH42323
ProteinID:KRH42323.1	InterPro:P-loop_NTPase	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	SUPFAM:SSF52540	UniParc:UPI00023C6290
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:6308990..6311899

Molecular Weight (calculated)

37119.1 Da

IEP (calculated)

9.227

GRAVY (calculated)

0.154

Length

322 amino acids

Sequence
(BLAST)

001: MALPWPVFNS IDIHRIMLNT KKGHSSLIVV TFKHDFLVIV SFPCFWLDLL EDFDKEFQEQ NLGVKSRCDW DKVLLFLLEG QDSVGFYRAL DSLNYKIYLL
101: WCVSPKEKVK YYDIASEKRI EFDRAMAKFN NKMVSNHSFS LLLSCLLFAR LWNIQFIFCC LAGKWGSLTK LAISLFTSMG IQGLGSLKLH FPDVPVMALT
201: ATATHAVRED ILKALRIPHA LVLERSFDRP NLKYEVIAKT KEPIKQLGQL LIDRFRNQCG IVYCLSKSEC VELSKLLSEK CKIKTVYYHS GLSAHQRVAV
301: KKKMVMMERS ILYVQLLLLE CG

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.