Factsheet for Zm00001d048672_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10228	Sorghum	nucleus	88.57	89.42
TraesCS4D01G144400.2	Wheat	nucleus	74.92	76.01
Os11t0672700-01	Rice	nucleus	70.48	75.51
TraesCS4A01G170100.1	Wheat	nucleus	74.13	75.2
TraesCS4B01G126600.1	Wheat	nucleus	72.38	74.15
GSMUA_AchrUn_...	Banana	nucleus	48.57	72.86
HORVU4Hr1G032190.1	Barley	nucleus	74.13	72.85
KRH42322	Soybean	cytosol, nucleus, plastid	14.76	61.59
CDY27743	Canola	nucleus	56.98	58.95
CDY66905	Canola	nucleus	56.98	58.95
AT3G05740.1	Thale cress	nucleus	56.35	58.58
KRH33841	Soybean	nucleus	56.67	58.52
PGSC0003DMT400007294	Potato	nucleus	42.22	58.46
VIT_14s0060g01440.t01	Wine grape	nucleus	56.98	57.44
Bra039413.1-P	Field mustard	nucleus	54.13	55.9
Solyc01g100280.2.1	Tomato	nucleus	55.56	49.72
KRH42323	Soybean	cytosol	16.98	33.23
Zm00001d018287_P001	Maize	nucleus	28.1	24.02
Zm00001d030366_P007	Maize	nucleus	25.87	20.79
Zm00001d010866_P004	Maize	nucleus	25.71	18.66
Zm00001d015212_P006	Maize	nucleus	34.29	18.38
Zm00001d025722_P002	Maize	nucleus	25.56	17.35
CDY27742	Canola	mitochondrion	0.48	12.0

Protein Annotations

EntrezGene:103652713	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6PNE9	ProteinID:AQK48379.1	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000844E102	EnsemblPlantsGene:Zm00001d048672	EnsemblPlants:Zm00001d048672_P001
EnsemblPlants:Zm00001d048672_T001	:	:	:	:	:

Description

ATP-dependent DNA helicase Q-like 1

Coordinates

chr4:+:3090493..3095287

Molecular Weight (calculated)

71095.7 Da

IEP (calculated)

7.460

GRAVY (calculated)

-0.420

Length

630 amino acids

Sequence
(BLAST)

001: MQQRARDGEQ HRLLDLAVES GFDRDLAASC LARLLEVYGE DGLDMVTVDN CGNDFLASLA DATQPTDDWD DLKGIETEAC GNLNDMMMKN VPDCNGGVAI
101: DSRYTSREPN SSSQRAPNHL EAFKFASDDS DFEMDNLPDK SCSMQRQTQS RNSGMQTRSS AKSTVTRETS RYEPTTPTSN REMPPAAFHQ RRELLSYEQL
201: CCLDDVNFAN AVIFGNKGFR PLQYEACRAA MDNQDCFILM PTGGGKSLCY QLPATLHPGV TVVVSPLLSL IQDQIVALTY RFAVPAAFLN SQQTSAQASA
301: VIQELRCGKP AFKLLYVTPE RIVTNYSFME TLRGLDQRGL LARFVIDEAH CVSQWGHDFR PDYRGLGCLK QNFPRVPIMA LTATATESVR KDVLGALRIP
401: NAVVLKRSFD RLNLNYEVIG KTKTFQKQLG DLLKERFMNE SGIVYCLSKN ECADTAKFLR EKYKIKCAHY HASLAARQRT SVQEKWHSGE VKVICATIAF
501: GMGIDKPDVF VNICEFSFTV QRFVIHNTLS KSIESYYQES GRAGRDELPA HCIVLYQKKD FSRIVCMLRN GENFRSESFR VAMEQAKKMQ AYCELKTECR
601: RQALLQHFGE QYDRRRCRDG PSPCDNCLKT

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.