Factsheet for Zm00001d030366_P007

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G008030.1	Barley	nucleus	36.99	81.01
KXG38755	Sorghum	nucleus	71.81	79.3
Os11t0708600-02	Rice	nucleus	51.66	77.44
TraesCS4D01G133500.1	Wheat	nucleus	69.39	77.38
TraesCS4A01G178600.5	Wheat	nucleus	68.88	76.7
TraesCS4B01G138800.1	Wheat	nucleus	68.11	76.07
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	17.22	68.18
GSMUA_Achr4P27590_001	Banana	nucleus	60.71	66.76
KRH39703	Soybean	nucleus	58.16	65.61
VIT_02s0087g00070.t01	Wine grape	nucleus	60.71	63.72
Solyc08g074610.1.1	Tomato	nucleus	44.64	63.64
Bra038422.1-P	Field mustard	nucleus	55.87	62.13
AT1G31360.3	Thale cress	nucleus	55.61	59.0
CDY12420	Canola	nucleus	55.87	52.9
Zm00001d048672_P001	Maize	nucleus	20.79	25.87
Zm00001d018287_P001	Maize	nucleus	21.56	22.93
Zm00001d015212_P006	Maize	nucleus	30.61	20.43
Zm00001d010866_P004	Maize	nucleus	18.88	17.05
Zm00001d025722_P002	Maize	nucleus	17.98	15.19

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	EntrezGene:100382802	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6KC81
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	ProteinID:ONM00895.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF16124	PFscan:PS50967
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	InterPro:RecQ_Zn-bd	SMART:SM00487
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000844FB87	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d030366	EnsemblPlants:Zm00001d030366_P007
EnsemblPlants:Zm00001d030366_T007	SEG:seg	:	:	:	:

Description

Mediator of RNA polymerase II transcription subunit 34

Coordinates

chr1:-:126625958..126666605

Molecular Weight (calculated)

88773.3 Da

IEP (calculated)

7.372

GRAVY (calculated)

-0.240

Length

784 amino acids

Sequence
(BLAST)

001: MASIVAQDEE NNRTVFLVSI QNRGMEDEEN IEGELLLVES QLHDIQGQIK TLLDRQEELY ERQAQLKALL EASKLTRNTT INTSSVAPED WSGSFPWDLE
101: ADDTRFNIFG ISSYRSNQRE IINAVMSGRD VLVIMAAGGG KSLCYQLPAV LRDGIALVVS PLLSLIQDQV MGLSALGIPA YMLTSTTNKE VEKFIYKTLD
201: KGEGELKILY VTPEKISKSK RFMSKLEKCH HAGRLSLIAI DEAHCCSQWG HDFRPDYKNL GILKIQFPSV PMIALTATAT SKVQMDLMEM LHIPRCIKFV
301: STVNRPNLFY KVSEKSPVGK VVIDEITKFI SESYPNNESG IIYCFSRKEC EQVAKELRER GISADYYHAD MDIVNREKIH MRWSKGKSQV IVGTVCPTFH
401: IPQTPRLPCT FLTLTFAFFL LIMQVAFGMG INKPDDQLAF FWWRLFPVGK IPQDLRSLEF DLLFITALAS LWRHTTRRVV GPDGMDYLQN VFCIIGLVMF
501: HGRQSSMVFY ENCGLQNLYD IVRYCQSKRS CRHGAFFRHF GEVPQDCNGM CDNCASTIEQ KDIDVTYHTK IIVSLLHDMQ LNDQRATLLQ LVDKFKSKWK
601: GLAVDLRKEE VEQLIVNLIL DNVLKEEFQH TAYSTNAYVT LGALWKPALQ GNRVVKLEIA IASKDRDVRS KGAKRGRMSD LEAKLDELRR DLSSTGSDAI
701: FPHAVLTAQQ ISLLSSQKPT TPAELEKVIG KVKTRKYGSK IIELMRSHDN SGSGRGKEAG DEHRAKKIKT KDEDVVCVES SEEE

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.