Factsheet for Os11t0708600-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G008030.1	Barley	nucleus	53.15	77.65
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	26.0	68.69
Solyc08g074610.1.1	Tomato	nucleus	71.13	67.64
TraesCS4D01G133500.1	Wheat	nucleus	82.41	61.31
TraesCS4A01G178600.5	Wheat	nucleus	82.41	61.22
KXG38755	Sorghum	nucleus	82.79	60.99
TraesCS4B01G138800.1	Wheat	nucleus	81.45	60.68
KRH39703	Soybean	nucleus	76.48	57.55
GSMUA_Achr4P27590_001	Banana	nucleus	76.67	56.24
Bra038422.1-P	Field mustard	nucleus	74.19	55.04
VIT_02s0087g00070.t01	Wine grape	nucleus	75.33	52.74
AT1G31360.3	Thale cress	nucleus	74.38	52.64
Zm00001d030366_P007	Maize	nucleus	77.44	51.66
CDY12420	Canola	nucleus	74.38	46.98
Os02t0780800-01	Rice	cytosol	25.24	40.99
Os11t0672700-01	Rice	nucleus	34.99	31.12
Os07t0681600-01	Rice	nucleus	31.93	18.85
Os04t0433800-01	Rice	nucleus	42.83	18.51
Os05t0150600-02	Rice	nucleus	26.96	16.71
Os04t0486800-01	Rice	nucleus	26.96	15.23

Protein Annotations

MapMan:15.3.3.5.3	Gene3D:3.40.50.300	UniProt:A0A0P0Y5W3	ProteinID:BAT15433.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ
GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009378	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	EnsemblPlantsGene:Os11g0708600	EnsemblPlants:Os11t0708600-02	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF16124	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	InterPro:RecQ_Zn-bd
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	TMHMM:TMhelix	UniParc:UPI0003939604

Description

Mediator 34_2Similar to RECQL1 protein. (Os11t0708600-01);Similar to ATP-dependent DNA helicase, RecQ family protein, expressed. (Os11t0708600-02)

Coordinates

chr11:-:28991727..29000858

Molecular Weight (calculated)

59252.6 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.150

Length

523 amino acids

Sequence
(BLAST)

001: MYEEDNIQGE LLLVQAELDD IQGQISALID RQEELYERES QLKAMLEVSK ASNNTINNTP SVGPKDWSGS FLWDSRADDV RFNVFGISSY RQNQREIINA
101: IMSGRDVLVI MAAGGGKSLC YQLPAVLHDG ITLVVSPLLS LIQDQVMGLA ALGIQAYMLA STTNKEVEKF VYKALDKGEG ELKILYVTPE KISKSKRFMS
201: KLEKCHHAGR LSLIAIDEAH CCSQWGHDFR PDYKNLGILK VQFPSVPMIA LTATATNKVQ IDLIEMLHIP RCVKFVSTIN RPNLFYKVFE KSPVGKVVID
301: EIANFISESY PNNESGIVYC FSRKECEQVA KELSERGILA DYYHADMDVI SREKVHMRWS KSKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILYYRPG DVPRQSSMVF YENCGLQNLY DIVRYCQSKR SCRRGAFFRH FGEAAQDCNG MCDNCTSSLE LKEIDATRMM ILHQLGNFTV
501: ALNYILDTCM FFSLYFYKMV FLG

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.