Factsheet for TraesCS4B01G126600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G144400.2	Wheat	nucleus	94.47	93.56
TraesCS4A01G170100.1	Wheat	nucleus	94.31	93.4
HORVU4Hr1G032190.1	Barley	nucleus	91.06	87.36
Os11t0672700-01	Rice	nucleus	72.03	75.34
GSMUA_AchrUn_...	Banana	nucleus	50.57	74.05
EES10228	Sorghum	nucleus	74.96	73.88
Zm00001d048672_P001	Maize	nucleus	74.15	72.38
PGSC0003DMT400007294	Potato	nucleus	44.39	60.0
KRH42322	Soybean	cytosol, nucleus, plastid	14.47	58.94
KRH33841	Soybean	nucleus	57.4	57.87
VIT_14s0060g01440.t01	Wine grape	nucleus	58.54	57.6
CDY27743	Canola	nucleus	55.94	56.49
AT3G05740.1	Thale cress	nucleus	55.28	56.11
CDY66905	Canola	nucleus	55.28	55.83
Bra039413.1-P	Field mustard	nucleus	53.33	53.77
Solyc01g100280.2.1	Tomato	nucleus	56.1	49.01
KRH42323	Soybean	cytosol	17.4	33.23
TraesCS4B01G138800.1	Wheat	nucleus	29.76	26.07
TraesCS6B01G371000.2	Wheat	nucleus	29.43	23.78
TraesCS1B01G119200.1	Wheat	nucleus	26.99	19.62
TraesCS2B01G120600.1	Wheat	nucleus	25.53	17.58
TraesCS2B01G321700.1	Wheat	nucleus	34.15	17.49
TraesCS2B01G363700.1	Wheat	nucleus	25.69	17.03
CDY27742	Canola	mitochondrion	0.49	12.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
TIGRFAMs:TIGR00614	EnsemblPlantsGene:TraesCS4B01G126600	EnsemblPlants:TraesCS4B01G126600.1	TIGR:cd00046	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr4B:-:163835314..163839424

Molecular Weight (calculated)

68784.0 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.422

Length

615 amino acids

Sequence
(BLAST)

001: MSCFLYSSCL PVEFDRNKNY SCDSPESFSD REGGQDFITV ENCGDDFIAA LADATQLTDD WDDLNAIETE ACGNLNEMMR KGVNDEKGGV VLDTPLFKRA
101: DSSSQHNPKG LKISSFSSDD SDFDIFDETN THRDNNVGTQ KKPQTRNSKA QTRSSTKSTV TKGTKRYEST TPASNREGQP NACLRKREIL SYEQLSSLDD
201: INLANAVIFG NKSFRPLQYE ACSAALDNKD CFILMPTGGG KSLCYQLPAT LHPGVTVVVC PLLSLIQDQV VALTFKFGIQ AAFLNSQQTS AQASAVIQEL
301: RNGTPSFKLL YVTPERMAGN YSFMEILKGL HQRGLLARFV IDEAHCVSQW GHDFRPDYRG LGCLKQHFPR VPIMALTATA TEAVRKDVLS TLRIPNALVL
401: KRSFDRHNLK YMVIGKTRTP QMQLGELLKE RFMNMSGIVY CLSKNECADT AKFLREKYKI KCAHYHAGLA ARQRSSVQEK WHRGEVKVIC ATIAFGMGID
501: KPDVSFVVHN TLSKSIESYY QESGRAGRDG LPAHCVVLYQ KKDFSRIVCM LRSADNFKSE TFKVAMDQAK KMQAYCELKT ECRRQTLLGH FGEQFNSQRC
601: KDGPSPCDIC LKEAS

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.