CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048672_P001	Maize	nucleus	89.42	88.57
Os11t0672700-01	Rice	nucleus	73.24	77.72
TraesCS4D01G144400.2	Wheat	nucleus	76.6	76.97
TraesCS4A01G170100.1	Wheat	nucleus	75.96	76.33
TraesCS4B01G126600.1	Wheat	nucleus	73.88	74.96
HORVU4Hr1G032190.1	Barley	nucleus	75.96	73.95
GSMUA_AchrUn_...	Banana	nucleus	49.68	73.81
KRH42322	Soybean	cytosol, nucleus, plastid	15.54	64.24
PGSC0003DMT400007294	Potato	nucleus	43.75	60.0
KRH33841	Soybean	nucleus	58.33	59.67
AT3G05740.1	Thale cress	nucleus	57.21	58.91
VIT_14s0060g01440.t01	Wine grape	nucleus	58.81	58.72
CDY27743	Canola	nucleus	57.05	58.46
CDY66905	Canola	nucleus	56.89	58.29
Bra039413.1-P	Field mustard	nucleus	54.65	55.9
Solyc01g100280.2.1	Tomato	nucleus	57.21	50.71
KRH42323	Soybean	cytosol	16.99	32.92
OQU81827	Sorghum	cytosol, extracellular	8.65	30.17
KXG38755	Sorghum	nucleus	29.33	25.77
KXG31219	Sorghum	nucleus	29.17	24.2
EES19033	Sorghum	nucleus	26.6	19.21
EES06253	Sorghum	nucleus	34.94	18.24
EER97745	Sorghum	nucleus	25.16	17.43
EES12342	Sorghum	plastid	25.96	16.77
CDY27742	Canola	mitochondrion	0.48	12.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8082084	UniProt:C5Y7K6	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DNA_helicase_ATP-dep_RecQ	EnsemblPlants:EES10228	ProteinID:EES10228	ProteinID:EES10228.1	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0009991	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042631
GO:GO:0043140	GO:GO:0070417	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490
EnsemblPlantsGene:SORBI_3005G210500	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0001A86CB0	RefSeq:XP_002451240.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:69711702..69716659

Molecular Weight (calculated)

70313.7 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.452

Length

624 amino acids

Sequence
(BLAST)

001: MDQRARRARE REQRRLLDLA VESGFDRDLA ASCLARLLEV YGEDGLALVT VENCGNDFLA SLADATQPTD DWDDLKGIET EACGNLNDMM MKNVTDCTGG
101: VAMDNSHTSR EPNLSSDALD HSEDFDFASD DSDFEMGDGM DNLHDNSFNM QRQTQSRNSG MQSRSSAKST VTRATNRYES MTPTSNREMP PAAFHQRREV
201: LSYEQLCGLD DVNFANVVIF GNKSFRPLQY EACRAAMNNQ DCFILMPTGG GKSLCYQLPA TLHPGVTVVV SPLLSLIQDQ IVALTYKFAI PAAFLNSQQT
301: PAQASAVIQE LRYGTPSFKL LYVTPERIAA NYSFMEMLRG LDQRGLLARF VIDEAHCVSQ WGHDFRPDYR GLGCLKQNFP RVPIMALTAT ATESVRKDVL
401: SALRIPNAVI LKRSFDRLNL NYEVIGKTKT PQKQLGDLLK ERFMNKSGIV YCLSKNECAD TAKFLREKYK IKCAHYHAGL AARQRTSVQE KWHSGEVKVI
501: CATIAFGMGI DKPDVRFVIH NTMSKSIESY YQESGRAGRD DLPAHCIVLY QKKDFSRIVC MLRNADNFKS ESFKVAMEQA KKMQTYCELK TECRRQALLE
601: HFGEQYNRQR CRDGPSPCDN CLKT

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.