Factsheet for TraesCS4A01G170100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G144400.2	Wheat	nucleus	98.07	98.07
TraesCS4B01G126600.1	Wheat	nucleus	93.4	94.31
HORVU4Hr1G032190.1	Barley	nucleus	93.56	90.64
Os11t0672700-01	Rice	nucleus	74.07	78.23
EES10228	Sorghum	nucleus	76.33	75.96
Zm00001d048672_P001	Maize	nucleus	75.2	74.13
GSMUA_AchrUn_...	Banana	nucleus	49.76	73.57
VIT_14s0060g01440.t01	Wine grape	nucleus	60.71	60.32
KRH33841	Soybean	nucleus	58.78	59.84
PGSC0003DMT400007294	Potato	nucleus	43.48	59.34
KRH42322	Soybean	cytosol, nucleus, plastid	14.33	58.94
CDY27743	Canola	nucleus	57.17	58.29
AT3G05740.1	Thale cress	nucleus	56.68	58.09
CDY66905	Canola	nucleus	56.52	57.64
Bra039413.1-P	Field mustard	nucleus	54.59	55.57
Solyc01g100280.2.1	Tomato	nucleus	57.65	50.85
KRH42323	Soybean	cytosol	17.07	32.92
TraesCS4A01G178600.5	Wheat	nucleus	29.63	26.14
TraesCS6A01G339900.1	Wheat	nucleus	29.15	23.75
TraesCS1A01G091400.2	Wheat	nucleus	26.89	19.24
TraesCS2A01G103300.1	Wheat	nucleus	25.6	17.81
TraesCS2A01G304900.1	Wheat	nucleus	33.82	17.49
TraesCS2A01G345300.1	Wheat	nucleus	25.6	17.06
CDY27742	Canola	mitochondrion	0.48	12.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	EnsemblPlantsGene:TraesCS4A01G170100	EnsemblPlants:TraesCS4A01G170100.1	TIGR:cd00046	TIGR:cd00079
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:429429906..429435897

Molecular Weight (calculated)

69645.1 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.424

Length

621 amino acids

Sequence
(BLAST)

001: MEEPHWERER LLDLAVDYGF DRDFAVAALS RLVHLYGEGG QDFITVENCG DDFIAALADA TQLTDDWDDL NAIETEACGN LNEMMRKGVN DEKGGVVLDT
101: PLFKRADSSS QHNPKGLKTS SFSSDDSDFD IFDETNTHRD NNVGTQKKPQ TRNSKAQTRS STKSTVTKGT KRYESSTPTS NREGQQNACL RKREILSYEQ
201: LSSLDDINLA NAVIFGNKSF RPLQYEACSA ALDNKDCFIL MPTGGGKSLC YQLPATLHPG VTVVVCPLLS LIQDQVVALT FKFGIQAAFL NSQQTAAQAS
301: AVIQELRNGT PSFKLLYVTP ERMAGNYPFK EILKGLHQRG LLARFVIDEA HCVSQWGHDF RPDYRGLGCL KQHFPRVPIM ALTATATEAV RKDVLSTLRI
401: PNALVLKRSF DRHNLDYMVI GKTRTPQMQL GELLKERFMN MSGIVYCLSK NECADTAKFL REKYKIKCAH YHAGLAARQR SSVQEKWHRG EVKVICATIA
501: FGMGIDKPDV RFVVHNTLSK SIESYYQESG RAGRDGLPAH CVVLYQKKDF SRIVCMLRSA DNFKSETFKV AMDQAKKMQA YCELKTECRR QTLLGHFGEQ
601: FNSQRCKDGP CPCDICLKEA S

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.