Factsheet for GSMUA_Achr8P06700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92892	Soybean	nucleus	52.12	48.83
TraesCS1B01G119200.1	Wheat	nucleus	50.5	47.75
HORVU1Hr1G021560.16	Barley	nucleus	50.5	47.75
TraesCS1D01G100000.1	Wheat	nucleus	50.38	47.64
EES19033	Sorghum	nucleus	51.12	47.34
Os05t0150600-02	Rice	nucleus	48.75	46.21
Zm00001d010866_P004	Maize	nucleus	50.12	46.2
TraesCS1A01G091400.2	Wheat	nucleus	50.12	46.2
Solyc01g099460.1.1	Tomato	nucleus	47.75	44.94
AT5G27680.2	Thale cress	nucleus	48.0	44.76
CDX80633	Canola	nucleus	19.38	41.89
CDX80627	Canola	nucleus	19.38	41.67
Bra009948.1-P	Field mustard	nucleus	47.88	41.59
GSMUA_AchrUn_...	Banana	nucleus	17.25	32.86
CDX80626	Canola	golgi, mitochondrion	30.25	32.14
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	19.75	29.21
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	12.25	20.12
GSMUA_Achr4P27590_001	Banana	nucleus	17.88	20.06
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	17.0	17.59
GSMUA_Achr10P...	Banana	nucleus	19.38	16.65
GSMUA_Achr6P17780_001	Banana	nucleus	18.75	12.64
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	2.0	7.92

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043138
EnsemblPlantsGene:GSMUA_Achr8G06700_001	EnsemblPlants:GSMUA_Achr8P06700_001	EnsemblPlants:GSMUA_Achr8T06700_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR015940	InterPro:IPR036388	UniProt:M0TN73	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF16124	PFscan:PS50030	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF69
InterPro:RecQ_Zn-bd	SMART:SM00490	SUPFAM:SSF46934	SUPFAM:SSF52540	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI000294A271	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

Putative ATP-dependent DNA helicase Q-like SIM [Source:GMGC_GENE;Acc:GSMUA_Achr8G06700_001]

Coordinates

chr8:+:4351977..4371774

Molecular Weight (calculated)

91035.0 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.524

Length

800 amino acids

Sequence
(BLAST)

001: MDGNDVATDY MVAKLIDMGF EFAKATEAIE VVGPSLDDAV EFILNGSCKS NNNGRAYHFL SCSTSQSFDE EYGPSHAPKR MKQSNITDHL PPLSKCRKLD
101: QQTISNVCAA SELRSQSRSL FNQEVELDWE QKIGDILKKH FGFFSLKGFQ KKALEAWLAN RDCLVLAATG SGTWTYTVEY KAMCGMYKIV YVCPETILRL
201: IEPLRRLAVN PGIALFAIDE VHCVSKWGHD FRPDYRRLRM LRENFNSCNL KSQQFDIPLM ALTATATIPV RKDIIESLHM SKETEIILTS FFRPNLRFSV
301: KHSRTSSVSS YAKDFKDLIR NYMVPKMTSR KGHKNISYEE NDNSENYSSG YDMSAEDESS LLDSEEDEDD NICDNYKVNL TEDSSSLKEN QLTVEYLEDD
401: LDIPYVVDDL DVSCGEFPGT SAAENLKTPG TSELYDIQGS LEEGPTIIYV PTRKETLKIA EYLCKSGVRA AAYHAKLAKT HLRHVHDEFH QGSLQVVVAT
501: IAFGMGIDKS NVRRIIHYGW PQSLEAYYQE AGRAGRDGKL ADCTLYANLS RIPTLLPSQR SDEQTKQAYK MLSDCFRYAM NTTTCRAKKL VGYFGEEFCH
601: DGCHLCDICV AGPPKTQNMK AEAVIFLGVL KAESGHTSDG YVYDTGNKML KGRSNLRVVI SRIREQSHKF ATVDRLWWQG LARILENMGY IRERDDMVHV
701: SIRFPELTEL GLRFLHSESE KDFFAHPEAD MLLATKEDQP YSTFSEWGRG WADPEIRRQR LQGKRHRRRK GRKRSQKYNA HNPSTVRGRL AAKLSIRTKH

Best Arabidopsis Sequence Match ( AT5G27680.2 )
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.