CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80633	Canola	nucleus	99.46	100.0
AT5G27680.2	Thale cress	nucleus	63.17	27.39
GSMUA_Achr8P06700_001	Banana	nucleus	41.67	19.38
KRG92892	Soybean	nucleus	41.67	18.15
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	23.92	16.45
EES19033	Sorghum	nucleus	35.48	15.28
TraesCS1B01G119200.1	Wheat	nucleus	34.68	15.25
HORVU1Hr1G021560.16	Barley	nucleus	34.41	15.13
TraesCS1D01G100000.1	Wheat	nucleus	34.41	15.13
Zm00001d010866_P004	Maize	nucleus	35.22	15.09
TraesCS1A01G091400.2	Wheat	nucleus	34.41	14.75
Solyc01g099460.1.1	Tomato	nucleus	33.06	14.47
Os05t0150600-02	Rice	nucleus	30.11	13.27
CDY27742	Canola	mitochondrion	0.81	12.0
CDY27743	Canola	nucleus	9.68	5.91
CDY66905	Canola	nucleus	9.68	5.91
CDY12420	Canola	nucleus	12.9	5.8
CDY64039	Canola	nucleus	10.48	5.44
CDX97959	Canola	nucleus	3.76	5.24
CDX89177	Canola	nucleus	3.76	5.24
CDY34859	Canola	nucleus	14.78	4.84
CDY34669	Canola	nucleus	14.78	4.75
CDY40476	Canola	nucleus	13.98	4.62
CDY12873	Canola	nucleus	13.98	4.61
CDY20972	Canola	nucleus	14.25	4.48
CDY20595	Canola	nucleus	14.25	4.47
CDY03955	Canola	nucleus	10.75	4.34
CDY15702	Canola	nucleus	10.75	4.12
CDX80626	Canola	golgi, mitochondrion	2.69	1.33
CDY41637	Canola	nucleus	1.08	1.2

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	EnsemblPlants:CDX80627	ProteinID:CDX80627	ProteinID:CDX80627.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00133764001	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF16124	PANTHER:PTHR13710
PANTHER:PTHR13710:SF69	InterPro:RecQ_Zn-bd	SUPFAM:SSF52540	UniParc:UPI0004EEA9F6	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

BnaC07g28170D

Coordinates

chrLK031821:+:1733372..1735130

Molecular Weight (calculated)

43483.1 Da

IEP (calculated)

9.556

GRAVY (calculated)

-0.645

Length

372 amino acids

Sequence
(BLAST)

001: MPTWFSPSRR DPTEAYYQEA GRAGRDGELA ECVLYANLSR VPTLLPSRRS KEQTEQAYKM LSDCFRYGMN TSQCRAKILV EYFGEDFTSK KCNLCDVCTK
101: GPPEQVNVRE EANLLFQVIS AFHLQAETSS EHASYEDYGL GNSKQKKLSY KPNLFFFISR IREQSQKLME IDRLWWKGLA RIMEAEGYIK EMDNKSRRVE
201: IAFIEPTEKG RKQLAFEDDK PLYVYPEADM LVSLKQRRTY SGFSSWGKGW ADPEIRRQRL ETMKRPRERK PRRERSRQQQ RSFFFALSPM FRQRRRAIEK
301: LKLVNEALVA AEENVARLQE RHDVILKEIC SYYLVNSELQ EALVAARAAV DVASGFVIEL RRLQLNLLNS LS

Best Arabidopsis Sequence Match ( AT5G27680.6 )
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQS LEAYYQEAGR AGRDGELAEC VLYADLSRAP TLLPSRRSKE QTEQAYKMLS
601: DCFRYGMNTS QCRAKILVEY FGEEFSSKKC NSCDVCTEGP PELVDVREEA NLLFQVITAF HLQVDNDSEH APYEDYGLGN SKQNKLSHKP NLLFFISKLR
701: EQCEKFKETD CLWWKGLARI MEAEGYIKEM DNKDRRVEIK FIQPTEKGKK QLDFQDDKPL YVYPEADMLL SLKQDRTYSG FSEWGKGWAD PEIRRQRLER
801: RERKPRRERK PRKKRTRGRS STKLHPWRSK E

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.