Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030065.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY03955 | Canola | nucleus | 87.96 | 92.83 |
| AT1G27880.1 | Thale cress | nucleus | 79.63 | 84.96 |
| VIT_01s0010g02590.t01 | Wine grape | mitochondrion | 47.43 | 67.01 |
| GSMUA_Achr6P28390_001 | Banana | cytosol, nucleus, plastid | 29.01 | 57.91 |
| KRH42637 | Soybean | nucleus | 51.75 | 55.64 |
| GSMUA_Achr6P28400_001 | Banana | cytosol, plastid | 11.01 | 52.97 |
| Os04t0486800-01 | Rice | nucleus | 47.84 | 50.22 |
| Solyc05g014690.1.1 | Tomato | nucleus | 51.54 | 50.0 |
| TraesCS2B01G363700.1 | Wheat | nucleus | 47.33 | 49.57 |
| OQU81827 | Sorghum | cytosol, extracellular | 9.05 | 49.16 |
| TraesCS2A01G345300.1 | Wheat | nucleus | 47.02 | 49.03 |
| TraesCS2D01G344000.2 | Wheat | nucleus | 47.33 | 48.99 |
| Zm00001d025722_P002 | Maize | nucleus | 45.99 | 48.17 |
| EES12342 | Sorghum | plastid | 46.71 | 47.0 |
| HORVU2Hr1G084110.2 | Barley | plastid | 45.58 | 46.68 |
| CDY41637 | Canola | nucleus | 11.32 | 32.93 |
| CDY66905 | Canola | nucleus | 15.23 | 24.3 |
| CDY27743 | Canola | nucleus | 15.12 | 24.14 |
| CDY64039 | Canola | nucleus | 15.95 | 21.62 |
| CDY12420 | Canola | nucleus | 15.54 | 18.24 |
| CDY12873 | Canola | nucleus | 18.42 | 15.85 |
| CDY40476 | Canola | nucleus | 18.31 | 15.81 |
| CDY34859 | Canola | nucleus | 18.11 | 15.49 |
| CDY34669 | Canola | nucleus | 18.42 | 15.44 |
| CDY20595 | Canola | nucleus | 18.62 | 15.27 |
| CDY20972 | Canola | nucleus | 18.31 | 15.05 |
| CDX80626 | Canola | golgi, mitochondrion | 11.11 | 14.34 |
| CDX80633 | Canola | nucleus | 4.12 | 10.81 |
| CDX80627 | Canola | nucleus | 4.12 | 10.75 |
| CDX97959 | Canola | nucleus | 1.23 | 4.49 |
| CDX89177 | Canola | nucleus | 1.23 | 4.49 |
| CDY27742 | Canola | mitochondrion | 0.1 | 4.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078FS79 | UniProt:A0A078FS79 | EnsemblPlants:CDY15702 | ProteinID:CDY15702 |
| ProteinID:CDY15702.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006310 | GO:GO:0008026 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00089924001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 |
| PANTHER:PTHR13710:SF108 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | UniParc:UPI0002541138 |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g08730DBnaA07g08730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FS79]
Coordinates
chrLK032056:-:556520..563744
Molecular Weight (calculated)
107559.0 Da
IEP (calculated)
8.839
GRAVY (calculated)
-0.287
Length
972 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFRGNSEDH KFVEKFLGIL SSKYFDGFSD GQSSEVLTKY SSEISSGISE ERSPRKIPRK TSLGRRLIPR KCSSEIPEDS DGSHISATPP RDPFPSPPPK
101: QVPPVSRKAP SSSSSSRSKP KAHTHPQAPD HSEEAPVPSS YPPPPSLFTD LPFRICEPSN RSQPAGSSSS VSSFYRLPRA NTSESESQSS SVNHVLPELP
201: HVPVVRRKPP NLITDSITSQ PVKAPVVFRS GGEGNFVKLN LNGKRGKKFP SKYKSASKSR SKFAYRGKRY KKSEANGEEE EGETWLDEES DLQRDNGFIS
301: SVEEAVLAVK AEASDENLTK LLSLVYGYES FRDGQLQAIK MVLSGSSTML VLPTGAGKSL CYQIPAMILP GITLVVSPLV SLMIDQLKHL PSVIKGGLLS
401: SSQRPEEATE TLRKLKEGII KVLFVSPERL LNVEFLSMFR MSLSVSLVVV DEAHCVSEWS HNFRPSYMRL KASMLYSALT ADCILAMTAT ATTMTLQAVM
501: SALEIPSTNL IQKSQLRENF ELSVSLSGAN RLKDLLILME SQPYKKIRSI IVYCKFQYET DMISKYLRDN NITAKGYHSG LPAKDRVRIQ ESFCSNKIRV
601: VVATVAFGMG LDKGDVGAVI HFSVPGSLEE YVQEIGRAGR DGRLSYCHLF YDEDTYLKLR SLSHSDGVDE YAVGKFLTHV FSSDTKQHEK ICSIVIESAS
701: HKFDMKEEVM QTILTHLELG EVQYLRMLPQ VNVCCTLNFH KSSPNILAAR NIIVAAILKK SHVKQGLYVF DIPTVASSTG VAATDVLAEI QTLKMKGEVT
801: YETKDPAFCY TILESPKDTS SLSSHLTKWL AEVESCKVRK LDIMSSAAMA AINVSNTSET SSGAKQTLSL QSRILDYFNG DENCDVPSKT TQNCSFLRAD
901: IKVFLQSNRQ AKFTPRAIAR IMHGVGSPAF PNSIWSKTHF WGRYMSVDFR AIMEAAQTEL MNFVDRNAAL AS
101: QVPPVSRKAP SSSSSSRSKP KAHTHPQAPD HSEEAPVPSS YPPPPSLFTD LPFRICEPSN RSQPAGSSSS VSSFYRLPRA NTSESESQSS SVNHVLPELP
201: HVPVVRRKPP NLITDSITSQ PVKAPVVFRS GGEGNFVKLN LNGKRGKKFP SKYKSASKSR SKFAYRGKRY KKSEANGEEE EGETWLDEES DLQRDNGFIS
301: SVEEAVLAVK AEASDENLTK LLSLVYGYES FRDGQLQAIK MVLSGSSTML VLPTGAGKSL CYQIPAMILP GITLVVSPLV SLMIDQLKHL PSVIKGGLLS
401: SSQRPEEATE TLRKLKEGII KVLFVSPERL LNVEFLSMFR MSLSVSLVVV DEAHCVSEWS HNFRPSYMRL KASMLYSALT ADCILAMTAT ATTMTLQAVM
501: SALEIPSTNL IQKSQLRENF ELSVSLSGAN RLKDLLILME SQPYKKIRSI IVYCKFQYET DMISKYLRDN NITAKGYHSG LPAKDRVRIQ ESFCSNKIRV
601: VVATVAFGMG LDKGDVGAVI HFSVPGSLEE YVQEIGRAGR DGRLSYCHLF YDEDTYLKLR SLSHSDGVDE YAVGKFLTHV FSSDTKQHEK ICSIVIESAS
701: HKFDMKEEVM QTILTHLELG EVQYLRMLPQ VNVCCTLNFH KSSPNILAAR NIIVAAILKK SHVKQGLYVF DIPTVASSTG VAATDVLAEI QTLKMKGEVT
801: YETKDPAFCY TILESPKDTS SLSSHLTKWL AEVESCKVRK LDIMSSAAMA AINVSNTSET SSGAKQTLSL QSRILDYFNG DENCDVPSKT TQNCSFLRAD
901: IKVFLQSNRQ AKFTPRAIAR IMHGVGSPAF PNSIWSKTHF WGRYMSVDFR AIMEAAQTEL MNFVDRNAAL AS
001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T
Arabidopsis Description
RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.