Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 4
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12410 | Sorghum | mitochondrion | 90.82 | 90.82 |
| KRH31421 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 89.37 | 89.37 |
| KRG97470 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 88.41 | 88.41 |
| GSMUA_Achr6P21190_001 | Banana | cytosol, nucleus, plastid | 35.27 | 87.95 |
| VIT_01s0010g02430.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 87.44 | 87.44 |
| TraesCS2B01G363300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 87.44 | 87.44 |
| Solyc05g014370.2.1 | Tomato | mitochondrion | 86.96 | 86.54 |
| TraesCS2D01G343300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 86.47 | 86.47 |
| TraesCS2A01G320000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 86.47 | 86.47 |
| PGSC0003DMT400045025 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 85.99 | 85.58 |
| Bra017340.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 85.51 | 84.69 |
| CDY04187 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 85.51 | 84.69 |
| CDY39177 | Canola | cytosol | 85.51 | 84.69 |
| Zm00001d025721_P001 | Maize | mitochondrion | 85.99 | 82.79 |
| AT3G25980.1 | Thale cress | cytosol | 83.57 | 82.78 |
| CDX83576 | Canola | extracellular, golgi | 51.21 | 75.71 |
| KRH08024 | Soybean | cytosol | 37.2 | 71.96 |
| Bra025176.1-P | Field mustard | cytosol | 30.92 | 67.37 |
| HORVU2Hr1G084050.1 | Barley | plastid | 87.92 | 66.91 |
| Zm00001d003249_P001 | Maize | mitochondrion | 76.81 | 33.4 |
Protein Annotations
| MapMan:13.3.5.5.4 | Gene3D:3.30.900.10 | EntrezGene:4336215 | EMBL:AK111976 | ProteinID:BAF15052.1 | ProteinID:BAS89796.1 |
| GO:GO:0000776 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 |
| GO:GO:0005737 | GO:GO:0005828 | GO:GO:0005856 | GO:GO:0005876 | GO:GO:0007049 | GO:GO:0007094 |
| GO:GO:0007346 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010369 | GO:GO:0016043 | InterPro:HORMA_dom |
| InterPro:HORMA_dom_sf | InterPro:IPR003511 | InterPro:IPR036570 | InterPro:Mad2 | EnsemblPlantsGene:Os04g0486500 | EnsemblPlants:Os04t0486500-01 |
| PFAM:PF02301 | PFscan:PS50815 | PANTHER:PTHR11842 | PANTHER:PTHR11842:SF11 | UniProt:Q0JC85 | SUPFAM:SSF56019 |
| UniParc:UPI0000DD913F | RefSeq:XP_015635627.1 | : | : | : | : |
Description
cell expansion-related gene MAD2Similar to Mitotic spindle checkpoint protein MAD2. (Os04t0486500-01)
Coordinates
chr4:-:24301505..24303104
Molecular Weight (calculated)
23563.4 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.096
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRTASKDI ITLRGSAAIV SEFFGYAANS ILYNRGVYPE ESFTKVKKYG LTMLLTQDEG VKTFIANLNT QLSEWLEAGK LQRIVLVIMS KATSEVLERW
101: NFSIQTDPEV VDKGVIKEKS DKEIMREIQA IMRQVASCIT YLPCLDEPCI FDVLAYTDMD VAVPFTWVES DAKLIENPQM VKLHSFDTKI HKVDTLVSYK
201: VDEWDEE
101: NFSIQTDPEV VDKGVIKEKS DKEIMREIQA IMRQVASCIT YLPCLDEPCI FDVLAYTDMD VAVPFTWVES DAKLIENPQM VKLHSFDTKI HKVDTLVSYK
201: VDEWDEE
001: MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
Arabidopsis Description
MAD2Mitotic spindle checkpoint protein MAD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU93]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.