Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0672800-01 | |
| Os01t0754500-01 | |
| Os05t0561600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24680.1 | Os01t0672800-01 | AT4G28300.1 | 21798944 |
| AT4G24680.1 | Os01t0754500-01 | AT4G28300.1 | 21798944 |
| AT4G24680.1 | Os05t0561600-01 | AT4G28300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G090800.2 | Wheat | nucleus | 57.31 | 9.91 |
| TraesCS5A01G084800.1 | Wheat | nucleus | 57.31 | 9.8 |
| TraesCS5D01G097200.2 | Wheat | nucleus | 56.54 | 9.68 |
| HORVU5Hr1G022070.5 | Barley | plasma membrane | 56.54 | 9.53 |
| KXG23720 | Sorghum | mitochondrion, nucleus | 51.54 | 8.84 |
| Zm00001d030659_P003 | Maize | mitochondrion, nucleus | 50.0 | 8.66 |
| Zm00001d041592_P002 | Maize | mitochondrion | 49.23 | 8.49 |
| Os11t0689650-00 | Rice | cytosol, mitochondrion, nucleus | 18.46 | 6.93 |
| GSMUA_Achr7P05560_001 | Banana | nucleus | 23.08 | 4.04 |
| PGSC0003DMT400046782 | Potato | nucleus | 20.38 | 4.02 |
| GSMUA_Achr1P18410_001 | Banana | nucleus | 21.54 | 3.86 |
| KRH03258 | Soybean | mitochondrion, nucleus | 21.15 | 3.5 |
| Solyc03g112660.2.1 | Tomato | mitochondrion | 20.38 | 3.45 |
| KRH57096 | Soybean | mitochondrion, nucleus | 19.62 | 3.24 |
| VIT_17s0000g08810.t01 | Wine grape | cytosol | 19.23 | 3.13 |
| AT4G24680.1 | Thale cress | nucleus | 15.77 | 2.87 |
| CDY11025 | Canola | nucleus | 15.0 | 2.8 |
| CDX92648 | Canola | nucleus | 14.62 | 2.75 |
| Bra019213.1-P | Field mustard | nucleus | 14.62 | 2.73 |
| Bra013824.1-P | Field mustard | cytosol | 13.85 | 2.66 |
| CDY03428 | Canola | nucleus | 13.85 | 2.62 |
| CDY34301 | Canola | nucleus | 13.08 | 2.48 |
| Os11t0689500-01 | Rice | nucleus, plastid | 0.38 | 0.22 |
Protein Annotations
| EnsemblPlants:Os12t0566200-01 | EnsemblPlantsGene:Os12g0566200 | InterPro:MOS1-like | PANTHER:PTHR34805 | ProteinID:BAT17694.1 | SEG:seg |
| UniParc:UPI000393A480 | UniProt:A0A0P0YBZ4 | MapMan:35.2 | : | : | : |
Description
Conserved hypothetical protein. (Os12t0566200-01)
Coordinates
chr12:+:23271514..23272915
Molecular Weight (calculated)
28947.5 Da
IEP (calculated)
10.058
GRAVY (calculated)
-1.621
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: SVVTVAKEHG AANKQRRQHV KAQRNEGSNY PNENKDQMAA PPAPGIDSNS YERRNMSRSD VKHSGTVPQP RSHWKPKTIP QSQGNSHGNN AKDGHVDSAT
101: PQDSSNNNLA ENIGWNDENH AHSEEVKGEK RHVDDYQKSE SHENAEQQQQ LSHAPRRQGH HNGGRYHRGG GTNRGRGYDV GKPSHVTNAE RRRGGTHLEY
201: QPVGSYNKTA DFQQNPGTDE RTEGAPVHRE RVHNRGPRPA GQFVKRNPAS TPAANSYRDE
101: PQDSSNNNLA ENIGWNDENH AHSEEVKGEK RHVDDYQKSE SHENAEQQQQ LSHAPRRQGH HNGGRYHRGG GTNRGRGYDV GKPSHVTNAE RRRGGTHLEY
201: QPVGSYNKTA DFQQNPGTDE RTEGAPVHRE RVHNRGPRPA GQFVKRNPAS TPAANSYRDE
001: MKRFFKPIEK ENSPAAKKPC LSPEKRDGDG DGVEEEKNQN EPSKFMTWNA NSFLLRVKND WSQFSKFVSD FDPDVIAIQE VRMPAAGGKG KPKNHEELSD
101: DTKVLREEKQ ILTRALSSPP FGNYGVWWSL ADSKYAGTAL LVKKCFKPRK VYFNLDKLAS KHEPDGRVIL AEFETFRLLN TYSPNNGWKD EENAFQRRRK
201: WDKRIVEFLN KTSDKPLIWC GDLNVSHEEI DVSHPEFFAT AKLNGYVPPN KEDCGQPGFT PSERGRFGAT IKEGRLVDAY RYLHKEQEME SGFSWSGNPI
301: GKYRGKRMRI DYFLVSEQLK DRIVSCKMHG RGIELEGFHG SDHCPVTLEL SKPSSEMEQN QVSN
101: DTKVLREEKQ ILTRALSSPP FGNYGVWWSL ADSKYAGTAL LVKKCFKPRK VYFNLDKLAS KHEPDGRVIL AEFETFRLLN TYSPNNGWKD EENAFQRRRK
201: WDKRIVEFLN KTSDKPLIWC GDLNVSHEEI DVSHPEFFAT AKLNGYVPPN KEDCGQPGFT PSERGRFGAT IKEGRLVDAY RYLHKEQEME SGFSWSGNPI
301: GKYRGKRMRI DYFLVSEQLK DRIVSCKMHG RGIELEGFHG SDHCPVTLEL SKPSSEMEQN QVSN
Arabidopsis Description
APE1LDNA-(apurinic or apyrimidinic site) lyase [Source:UniProtKB/TrEMBL;Acc:A0A178VA84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.