Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012728_P001 | Maize | nucleus | 65.82 | 66.95 |
| EES03625 | Sorghum | nucleus | 63.13 | 63.88 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 60.27 | 59.37 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 60.27 | 59.37 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 60.1 | 58.91 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 59.43 | 58.25 |
| KRH55962 | Soybean | nucleus | 16.5 | 48.04 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 12.12 | 47.68 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 36.87 | 45.91 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 33.67 | 40.4 |
| Solyc07g053990.2.1 | Tomato | nucleus | 32.83 | 39.16 |
| KRH25575 | Soybean | nucleus | 35.19 | 39.14 |
| Solyc10g008340.2.1 | Tomato | extracellular | 35.19 | 38.35 |
| AT4G28300.1 | Thale cress | nucleus | 31.65 | 37.9 |
| PGSC0003DMT400034191 | Potato | nucleus | 34.68 | 37.59 |
| PGSC0003DMT400047245 | Potato | nucleus | 33.84 | 37.43 |
| Bra026268.1-P | Field mustard | nucleus | 29.97 | 37.4 |
| CDX89188 | Canola | nucleus | 29.29 | 37.02 |
| CDX97433 | Canola | nucleus | 30.3 | 36.59 |
| Bra010376.1-P | Field mustard | nucleus | 30.13 | 36.46 |
| CDY25250 | Canola | nucleus | 30.13 | 36.38 |
| CDY14248 | Canola | nucleus | 29.97 | 36.25 |
| CDY18985 | Canola | nucleus | 29.12 | 36.12 |
| CDY29896 | Canola | nucleus | 29.29 | 35.73 |
| Bra024211.1-P | Field mustard | nucleus | 29.29 | 35.73 |
| CDY67879 | Canola | nucleus | 27.95 | 34.73 |
| Os05t0561600-01 | Rice | plastid | 29.8 | 34.17 |
| KRH26948 | Soybean | nucleus | 30.13 | 33.65 |
| KRH22387 | Soybean | nucleus | 29.46 | 32.59 |
| KRH55961 | Soybean | cytosol | 14.81 | 32.23 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 18.52 | 31.43 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 22.22 | 29.01 |
| Os01t0169900-01 | Rice | plasma membrane | 23.23 | 23.79 |
| Os05t0169400-01 | Rice | plastid | 20.88 | 23.13 |
Protein Annotations
| EMBL:AK073811 | EnsemblPlants:Os01t0754500-01 | EnsemblPlantsGene:Os01g0754500 | EntrezGene:4325133 | InterPro:DUF1421 | ncoils:Coil |
| PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 | PFAM:PF07223 | ProteinID:BAD87289.1 | ProteinID:BAF06194.1 | ProteinID:BAS74394.1 |
| ProteinID:BAS74395.1 | RefSeq:XP_015621442.1 | SEG:seg | UniParc:UPI00004C291F | UniProt:Q5JML5 | MapMan:35.2 |
Description
Protein of unknown function DUF1421 family protein. (Os01t0754500-01);Hypothetical conserved gene. (Os01t0754500-02)
Coordinates
chr1:-:31651616..31656436
Molecular Weight (calculated)
65757.9 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.979
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSGVPAGR GSRSFDFGAD DVLCSYDDFA APSEPKRPDP ADKDFHDSRL GRPFGKAYEQ ESYGKEDVLF AVEKCMKKYA DNLLRSLEGI TNRLSQLEIY
101: CYKLERSMGE LRSDVLRDET DQRLKSLEKH LHEVHRSIQI LRDKQELAET QKELAKFQLT HDTSKKKEDM PTPSFPEQKT LEEKADAPGQ QLAIVLPHQV
201: NSSLAPRASQ PVQQYKDQTV QQPPSSSVPQ QDRYVLSQAI VYYPQRQAPG IQDTQGQQVQ PEVQYLPVRP SATQDVPVHA SSQQSQAANQ TQPQSFPPYQ
301: QQWPQQSSQP APAPVAQPQP TFSQPFPPPV QQPQLSNTQQ FPPQPMQQPQ LSNTQQFAPQ PVQQPNAQQF PPPPVQPQQS NTQLPPQAMQ PQQHPPVQNQ
401: MRPQTPPNYP HYQPHQSLNP PPETLPGSMA MQGPYNTVAP AAGSRSEVPY SYGGPGMPPP QHNMQRQQLP PPSQGSFGPP SKGGYAGPPQ YAPQGSSHGY
501: NTAYGYPPSG PSAAQAPQMP PAPGNVGMSH PGSHQMMRGH PYGEMIEKAI TMGYPREQVM NVIQRMTESG QPMDFNTLLD RLNEAGSGAP PRAW
101: CYKLERSMGE LRSDVLRDET DQRLKSLEKH LHEVHRSIQI LRDKQELAET QKELAKFQLT HDTSKKKEDM PTPSFPEQKT LEEKADAPGQ QLAIVLPHQV
201: NSSLAPRASQ PVQQYKDQTV QQPPSSSVPQ QDRYVLSQAI VYYPQRQAPG IQDTQGQQVQ PEVQYLPVRP SATQDVPVHA SSQQSQAANQ TQPQSFPPYQ
301: QQWPQQSSQP APAPVAQPQP TFSQPFPPPV QQPQLSNTQQ FPPQPMQQPQ LSNTQQFAPQ PVQQPNAQQF PPPPVQPQQS NTQLPPQAMQ PQQHPPVQNQ
401: MRPQTPPNYP HYQPHQSLNP PPETLPGSMA MQGPYNTVAP AAGSRSEVPY SYGGPGMPPP QHNMQRQQLP PPSQGSFGPP SKGGYAGPPQ YAPQGSSHGY
501: NTAYGYPPSG PSAAQAPQMP PAPGNVGMSH PGSHQMMRGH PYGEMIEKAI TMGYPREQVM NVIQRMTESG QPMDFNTLLD RLNEAGSGAP PRAW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.