Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25575 | Soybean | nucleus | 82.42 | 42.13 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 51.65 | 40.29 |
| KRH26948 | Soybean | nucleus | 56.41 | 28.95 |
| KRH22387 | Soybean | nucleus | 54.58 | 27.75 |
| Solyc07g053990.2.1 | Tomato | nucleus | 48.72 | 26.71 |
| PGSC0003DMT400047245 | Potato | nucleus | 47.62 | 24.21 |
| PGSC0003DMT400034191 | Potato | nucleus | 47.99 | 23.91 |
| Solyc10g008340.2.1 | Tomato | extracellular | 44.32 | 22.2 |
| AT4G28300.1 | Thale cress | nucleus | 38.46 | 21.17 |
| Bra026268.1-P | Field mustard | nucleus | 36.63 | 21.01 |
| Bra010376.1-P | Field mustard | nucleus | 37.73 | 20.98 |
| CDY67879 | Canola | nucleus | 36.63 | 20.92 |
| CDY29896 | Canola | nucleus | 37.0 | 20.74 |
| Bra024211.1-P | Field mustard | nucleus | 37.0 | 20.74 |
| CDY14248 | Canola | nucleus | 37.0 | 20.57 |
| CDX89188 | Canola | nucleus | 35.16 | 20.43 |
| CDY25250 | Canola | nucleus | 36.26 | 20.12 |
| CDX97433 | Canola | nucleus | 36.26 | 20.12 |
| CDY18985 | Canola | nucleus | 34.07 | 19.42 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 34.8 | 15.75 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 34.43 | 15.51 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 34.07 | 15.42 |
| Zm00001d012728_P001 | Maize | nucleus | 32.6 | 15.24 |
| Os01t0754500-01 | Rice | nucleus | 32.23 | 14.81 |
| EES03625 | Sorghum | nucleus | 31.5 | 14.65 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 31.14 | 14.03 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 24.18 | 13.84 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 21.98 | 13.19 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 23.44 | 12.93 |
| OQU78421 | Sorghum | plastid | 21.25 | 11.18 |
| EES03419 | Sorghum | nucleus | 21.98 | 11.15 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 21.61 | 11.11 |
| Zm00001d038998_P001 | Maize | plastid | 21.25 | 11.07 |
| KRH56551 | Soybean | nucleus | 22.71 | 10.82 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 20.88 | 10.78 |
| KRG93222 | Soybean | nucleus | 22.34 | 10.55 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 20.15 | 10.54 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 20.15 | 10.36 |
| Zm00001d043906_P002 | Maize | nucleus | 20.51 | 10.2 |
| Os05t0561600-01 | Rice | plastid | 19.05 | 10.04 |
| TraesCS3A01G272000.1 | Wheat | plastid | 19.41 | 9.96 |
| Zm00001d011562_P003 | Maize | plastid | 20.88 | 9.86 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 19.05 | 9.85 |
| TraesCS3B01G305700.1 | Wheat | plastid | 18.68 | 9.51 |
| TraesCS3D01G271600.1 | Wheat | plastid | 17.95 | 9.14 |
| KRH55962 | Soybean | nucleus | 1.1 | 1.47 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| EMBL:ACUP02004072 | EnsemblPlants:KRH55961 | EnsemblPlantsGene:GLYMA_06G2928002 | InterPro:DUF1421 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 |
| PFAM:PF07223 | ProteinID:KRH55961 | ProteinID:KRH55961.1 | SEG:seg | UniParc:UPI0006EDB0CD | UniProt:A0A0R0JT50 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:48156177..48156998
Molecular Weight (calculated)
29897.8 Da
IEP (calculated)
7.917
GRAVY (calculated)
-0.988
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: YLPSDQQYRT PQLVAPQPTP SQVTPSPPVQ QFSHYQQPQQ QQQPPQQQQQ QWSQQVQPSQ PPPMQSQVRP SSPNVYPPYQ PNQATNPSPA ETLPNSMAMQ
101: MPYSGVPPQG SNRADAIPYG YGGAGRTVPQ QPPPQQMKSS FPAPPGEMYG PTGSLPALPP PSSAYMMYDG EGGRSHHPPQ PPHFAQPGYP PTSASLQNPP
201: QGHNLMVRNP NQSQFVRNHP YNELIEKLVS MGFRGDHVAS VIQRMEESGQ AVDFNSVLDR LSSVGPQRGG WSG
101: MPYSGVPPQG SNRADAIPYG YGGAGRTVPQ QPPPQQMKSS FPAPPGEMYG PTGSLPALPP PSSAYMMYDG EGGRSHHPPQ PPHFAQPGYP PTSASLQNPP
201: QGHNLMVRNP NQSQFVRNHP YNELIEKLVS MGFRGDHVAS VIQRMEESGQ AVDFNSVLDR LSSVGPQRGG WSG
001: MARSSVFPTS SYSPPEDSLS QDITDTVERT MKMYADNMMR FLEGLSSRLS QLELYCYNLD KTIGEMRSEL THAHEDADVK LRSLDKHLQE VHRSVQILRD
101: KQELADTQKE LAKLQLVQKE SSSSSHSQHG EDRVATPVPE PKKSENTSDA HNQQLALALP HQIAPQPQVQ PQPQPQQHQY YMPPPPTQLQ NTPAPVPVST
201: PPSQLQAPPA QSQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPTYSPAP PGNQPPVESL PSSMQMQSPY SGPPQQSMQA YGYGAAPPPQ
301: APPQQTKMSY SPQTGDGYLP SGPPPPSGYA NAMYEGGRMQ YPPPQPQQQQ QQAHYLQGPQ GGGYSPQPHQ AGGGNIGAPP VLRSKYGELI EKLVSMGFRG
401: DHVMAVIQRM EESGQPIDFN TLLDRLSGQS SGGPPRGW
101: KQELADTQKE LAKLQLVQKE SSSSSHSQHG EDRVATPVPE PKKSENTSDA HNQQLALALP HQIAPQPQVQ PQPQPQQHQY YMPPPPTQLQ NTPAPVPVST
201: PPSQLQAPPA QSQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPTYSPAP PGNQPPVESL PSSMQMQSPY SGPPQQSMQA YGYGAAPPPQ
301: APPQQTKMSY SPQTGDGYLP SGPPPPSGYA NAMYEGGRMQ YPPPQPQQQQ QQAHYLQGPQ GGGYSPQPHQ AGGGNIGAPP VLRSKYGELI EKLVSMGFRG
401: DHVMAVIQRM EESGQPIDFN TLLDRLSGQS SGGPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.