Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G109740.2 | |
| HORVU2Hr1G109820.1 | |
| HORVU6Hr1G053590.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28300.1 | HORVU2Hr1G109740.2 | AT3G51180.1 | 21798944 |
| AT4G28300.1 | HORVU2Hr1G109820.1 | AT3G51180.1 | 21798944 |
| AT4G28300.1 | HORVU6Hr1G053590.1 | AT4G24700.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G394400.1 | Wheat | nucleus | 89.64 | 89.98 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 85.69 | 85.69 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 83.24 | 83.71 |
| OQU78421 | Sorghum | plastid | 65.91 | 67.44 |
| Os05t0561600-01 | Rice | plastid | 63.28 | 64.86 |
| Zm00001d038998_P001 | Maize | plastid | 58.95 | 59.73 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 52.92 | 53.83 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 9.6 | 33.77 |
| KRH55962 | Soybean | nucleus | 12.81 | 33.33 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 26.93 | 29.98 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 25.61 | 27.47 |
| Solyc10g008340.2.1 | Tomato | extracellular | 27.12 | 26.42 |
| PGSC0003DMT400034191 | Potato | nucleus | 26.93 | 26.09 |
| Solyc07g053990.2.1 | Tomato | nucleus | 24.11 | 25.7 |
| CDY18985 | Canola | nucleus | 23.16 | 25.68 |
| KRH25575 | Soybean | nucleus | 25.8 | 25.66 |
| AT4G28300.1 | Thale cress | nucleus | 23.73 | 25.4 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 28.81 | 25.37 |
| KRH26948 | Soybean | nucleus | 25.24 | 25.19 |
| CDX89188 | Canola | nucleus | 22.22 | 25.11 |
| Bra026268.1-P | Field mustard | nucleus | 22.41 | 25.0 |
| CDX97433 | Canola | nucleus | 23.16 | 25.0 |
| KRH22387 | Soybean | nucleus | 25.24 | 24.95 |
| CDY67879 | Canola | nucleus | 22.41 | 24.9 |
| CDY14248 | Canola | nucleus | 22.98 | 24.85 |
| CDY25250 | Canola | nucleus | 22.98 | 24.8 |
| PGSC0003DMT400047245 | Potato | nucleus | 25.05 | 24.77 |
| Bra010376.1-P | Field mustard | nucleus | 22.6 | 24.44 |
| CDY29896 | Canola | nucleus | 22.41 | 24.44 |
| Bra024211.1-P | Field mustard | nucleus | 22.41 | 24.44 |
| KRH55961 | Soybean | cytosol | 11.11 | 21.61 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 13.94 | 21.14 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 16.76 | 15.59 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 16.76 | 14.96 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G086930.4 | EnsemblPlantsGene:HORVU1Hr1G086930 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF4 |
| PFAM:PF07223 | SEG:seg | UniParc:UPI000B46C0CD | UniProt:A0A287GLE6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr1H:-:538422828..538426586
Molecular Weight (calculated)
58883.0 Da
IEP (calculated)
6.673
GRAVY (calculated)
-0.645
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPARPASV SGPFGMSPDL ARCSFDHTLR REQDFQDNRL LRSLVSMRDQ EIHSKEIITE AIESCMNKQA ENLVNSLDVI SGRLSQLELY CYKLERSIGE
101: LRSDVMDYHS EANLNFRGLD KNVKEVQKCV QVLQDKQELA ETQNDLAKLQ IAYEDPAQKS EGTAPSVFMA RENDGSFPGA KHELALVPLH QVNATQSPAM
201: QFQSCNGLIL QQLVPVSLST QQDQPHLNQP TVYRTQNQCH PEHRQAQTFQ PAPQSMQPQA QNPRPQTVVE VPPITSQAPE FYIQAQHHWQ HQTVQDVHSQ
301: ARQQQPQPQV AQQQQYHNMQ QVPAQMVQLQ TSSPQAQSAP HVALFYPPYG SQQPACGNTE TLSRGMVVQP AYSTISSSQR KHHEAAPVYV QSSAIAVPMA
401: EHHIQHQQTQ QFHSPGNGSF APQQCKVGPY SVQGGAQAYN TVYGSPPNSA ATFVAVLPQQ AQASAPMMLH HLGPQPVQNH PADMADKAVR MGYLNDHAEN
501: MPRRMVATGQ PVEYNTFHDG LSSVGNAAWS G
101: LRSDVMDYHS EANLNFRGLD KNVKEVQKCV QVLQDKQELA ETQNDLAKLQ IAYEDPAQKS EGTAPSVFMA RENDGSFPGA KHELALVPLH QVNATQSPAM
201: QFQSCNGLIL QQLVPVSLST QQDQPHLNQP TVYRTQNQCH PEHRQAQTFQ PAPQSMQPQA QNPRPQTVVE VPPITSQAPE FYIQAQHHWQ HQTVQDVHSQ
301: ARQQQPQPQV AQQQQYHNMQ QVPAQMVQLQ TSSPQAQSAP HVALFYPPYG SQQPACGNTE TLSRGMVVQP AYSTISSSQR KHHEAAPVYV QSSAIAVPMA
401: EHHIQHQQTQ QFHSPGNGSF APQQCKVGPY SVQGGAQAYN TVYGSPPNSA ATFVAVLPQQ AQASAPMMLH HLGPQPVQNH PADMADKAVR MGYLNDHAEN
501: MPRRMVATGQ PVEYNTFHDG LSSVGNAAWS G
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.