CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97851
KRH03218
KRH28782
KRH28783
KRH31028
KRH57138
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	KRG97851	AT2G39740.1	21798944
AT4G28300.1	KRH31028	AT2G39740.1	21798944
AT4G28300.1	KRH28782	AT3G51180.1	21798944
AT4G28300.1	KRH28783	AT3G51180.1	21798944
AT4G28300.1	KRH69800	AT3G51180.1	21798944
AT4G28300.1	KRH69802	AT3G51180.1	21798944
AT4G28300.1	KRH76672	AT3G51180.1	21798944
AT4G28300.1	KRH03218	AT4G24700.1	21798944
AT4G28300.1	KRH57138	AT4G24700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55962	Soybean	nucleus	33.71	88.24
KRH55961	Soybean	cytosol	42.13	82.42
KRH26948	Soybean	nucleus	59.93	60.15
VIT_12s0028g03740.t01	Wine grape	nucleus	16.85	59.6
KRH22387	Soybean	nucleus	59.36	59.03
Solyc07g053990.2.1	Tomato	nucleus	53.93	57.83
PGSC0003DMT400047245	Potato	nucleus	54.87	54.56
AT4G28300.1	Thale cress	nucleus	48.5	52.22
PGSC0003DMT400034191	Potato	nucleus	53.18	51.82
CDY14248	Canola	nucleus	47.19	51.32
Solyc10g008340.2.1	Tomato	extracellular	52.25	51.19
Bra010376.1-P	Field mustard	nucleus	46.63	50.71
CDY25250	Canola	nucleus	46.25	50.2
CDX97433	Canola	nucleus	46.25	50.2
CDY67879	Canola	nucleus	44.38	49.58
CDY18985	Canola	nucleus	44.19	49.27
VIT_12s0028g03730.t01	Wine grape	nucleus	32.21	49.14
Bra026268.1-P	Field mustard	nucleus	43.63	48.95
CDY29896	Canola	nucleus	44.57	48.87
Bra024211.1-P	Field mustard	nucleus	44.57	48.87
CDX89188	Canola	nucleus	42.88	48.72
GSMUA_Achr4P07980_001	Banana	nucleus	33.52	37.53
Zm00001d012728_P001	Maize	nucleus	38.58	35.27
Os01t0754500-01	Rice	nucleus	39.14	35.19
EES03625	Sorghum	nucleus	38.39	34.92
HORVU3Hr1G072520.1	Barley	nucleus	38.76	34.33
TraesCS3B01G327600.1	Wheat	nucleus	38.58	34.16
TraesCS3D01G292600.1	Wheat	nucleus	38.58	33.99
TraesCS3A01G292800.1	Wheat	nucleus	38.2	33.66
GSMUA_Achr4P15050_001	Banana	nucleus	29.96	32.32
Os05t0561600-01	Rice	plastid	25.66	26.45
OQU78421	Sorghum	plastid	25.47	26.2
Zm00001d038998_P001	Maize	plastid	25.47	25.95
HORVU1Hr1G086930.4	Barley	nucleus	25.66	25.8
TraesCS1A01G394400.1	Wheat	nucleus	25.28	25.52
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	24.53	25.1
TraesCS1D01G402000.1	Wheat	nucleus	24.72	24.86
TraesCS1B01G422400.1	Wheat	nucleus	24.16	24.43
Os01t0672800-01	Rice	cytosol, nucleus	20.79	24.4
EES03419	Sorghum	nucleus	24.53	24.35
Zm00001d043906_P002	Maize	nucleus	24.91	24.23
TraesCS3B01G305700.1	Wheat	plastid	23.41	23.32
TraesCS3D01G271600.1	Wheat	plastid	22.85	22.76
TraesCS3A01G272000.1	Wheat	plastid	22.47	22.56
Zm00001d011562_P003	Maize	plastid	23.6	21.8
KRH56551	Soybean	nucleus	22.1	20.59
KRG93222	Soybean	nucleus	22.1	20.42

Protein Annotations

EMBL:ACUP02007289	EnsemblPlants:KRH25575	EnsemblPlantsGene:GLYMA_12G113200	EntrezGene:100810231	InterPro:DUF1421	ncoils:Coil
PANTHER:PTHR31805	PANTHER:PTHR31805:SF3	PFAM:PF07223	ProteinID:KRH25575	ProteinID:KRH25575.1	SEG:seg
UniParc:UPI00023D13DE	UniProt:I1LS24	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:11088159..11094616

Molecular Weight (calculated)

58969.4 Da

IEP (calculated)

6.615

GRAVY (calculated)

-0.980

Length

534 amino acids

Sequence
(BLAST)

001: MASGSSGRGN SASKGFDFAS DDILCSYDDY ANRDSSSNGN HTDPQDFHKS RRMFPTTAYN PPEDSLSQDV IATVEKSMKK YADNLMRFLE GISSRLSQLE
101: LYCYNLDKSI GEMKCDINRD HVEQESRLKS LEKHVQEVHR SVQILRDKQE LAETQKELAK LQLAQKESSS SSHSQSNEER SSPTTDPKKT DNASDANNQQ
201: LALALPHQIA PQPQPPAPQV QAQAQAPAPN VTQVPQQPPY YMPPTPLPNP AVPQHPQNQY LPSDQQYRTP QHVAPQPTPS QVTPSPVQQF SHYQQQQQQP
301: QQQQPQQQQQ WSQQVLPSQP PPMQSQVRPP SPNVYPPYQP NQATNPSPAE TLPNSMAMQM PYSGVPPPGS SRTDAIPYGY GGAGRTVPQQ PPPQQMKSSF
401: PAPPADMYGP SGNLPALPPP SGAYMMYDGE GGRTHHPPQP HFAQPGYPPT SASLQNPPPG LNLMVRNPNQ SQFIRNHPYN ELIEKLVSMG FRGDHVASVI
501: QRMEESGQAI DFNSVLDRLN VHSSVGPQRG GWSG

Best Arabidopsis Sequence Match ( AT4G28300.1 )
(BLAST)

001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.