Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010376.1-P | Field mustard | nucleus | 91.65 | 91.65 |
| CDY25250 | Canola | nucleus | 89.21 | 89.02 |
| CDX97433 | Canola | nucleus | 88.8 | 88.62 |
| CDX89188 | Canola | nucleus | 78.21 | 81.7 |
| CDY18985 | Canola | nucleus | 79.23 | 81.21 |
| CDY67879 | Canola | nucleus | 76.99 | 79.08 |
| AT4G28300.1 | Thale cress | nucleus | 79.84 | 79.03 |
| CDY29896 | Canola | nucleus | 76.37 | 77.0 |
| KRH55962 | Soybean | nucleus | 26.68 | 64.22 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 18.13 | 58.94 |
| KRH25575 | Soybean | nucleus | 51.32 | 47.19 |
| Solyc07g053990.2.1 | Tomato | nucleus | 47.86 | 47.19 |
| PGSC0003DMT400047245 | Potato | nucleus | 48.07 | 43.95 |
| Solyc10g008340.2.1 | Tomato | extracellular | 47.86 | 43.12 |
| PGSC0003DMT400034191 | Potato | nucleus | 47.25 | 42.34 |
| KRH26948 | Soybean | nucleus | 43.58 | 40.23 |
| KRH22387 | Soybean | nucleus | 42.57 | 38.92 |
| KRH55961 | Soybean | cytosol | 20.57 | 37.0 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 32.99 | 33.96 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 23.01 | 32.29 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 38.9 | 31.52 |
| Zm00001d012728_P001 | Maize | nucleus | 37.27 | 31.34 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 38.09 | 31.01 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 31.16 | 30.91 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 37.88 | 30.85 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 37.88 | 30.69 |
| EES03625 | Sorghum | nucleus | 36.46 | 30.49 |
| Os01t0754500-01 | Rice | nucleus | 36.25 | 29.97 |
| Os05t0561600-01 | Rice | plastid | 25.05 | 23.75 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 25.46 | 23.63 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 25.25 | 23.35 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 24.85 | 22.98 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 24.44 | 22.73 |
| CDX91045 | Canola | nucleus | 22.4 | 22.63 |
| OQU78421 | Sorghum | plastid | 23.42 | 22.16 |
| CDX85594 | Canola | nucleus | 21.79 | 21.97 |
| Zm00001d038998_P001 | Maize | plastid | 23.01 | 21.56 |
| Zm00001d043906_P002 | Maize | nucleus | 24.03 | 21.49 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 22.81 | 21.46 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.42 | 21.46 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.22 | 21.27 |
| EES03419 | Sorghum | nucleus | 23.01 | 21.0 |
| TraesCS3A01G272000.1 | Wheat | plastid | 22.61 | 20.86 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 18.74 | 20.22 |
| Zm00001d011562_P003 | Maize | plastid | 21.38 | 18.17 |
Protein Annotations
| EnsemblPlants:CDY14248 | EnsemblPlantsGene:GSBRNA2T00078830001 | InterPro:DUF1421 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 | PFAM:PF07223 |
| ProteinID:CDY14248 | ProteinID:CDY14248.1 | SEG:seg | UniParc:UPI0004EE07B1 | UniProt:A0A078FPI8 | MapMan:35.2 |
Description
BnaA08g13790DBnaA08g13790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPI8]
Coordinates
chrLK032041:-:452834..455002
Molecular Weight (calculated)
53509.1 Da
IEP (calculated)
6.451
GRAVY (calculated)
-0.948
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGASGRVN PGSKGFDFGS DDILCSYDDF TNHDSSNGSN SDQLIGASNS NKEFHKTRMA KSSVFPTGSY GPPEDSLREE LTATVERSMK KYSDNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSDLSR DNEEAHVKLR SLDKHLQEVH RSVQVLRDKQ ELADTQKELA RLQLVSKDSS SSSHSQHGEE RVATPVPEHK
201: KNENTSDAPN LQLALALPHQ IAPQPPAQPQ QQQQQYYMPP ATQLQNTPAP APVPPPPSQP QAPPAQARFM PPPAAPSHPS SAQTQSFTQY QQNWPPQPQA
301: RPQSSGAYQP YTPAPPSNQS PVEPLPGSMQ MQSPYGGPPQ QSMQAYGYGA PPPQAPQQTK MSYNPQTGDG YLPSGPPPPG YASAMYEDGR MQYPPPQPQQ
401: QQQGHYMQGP PGGGYAPQQH QAGGGGNTGT PSPVLRSKYG ELIEKLVSMG FRGDHVMAVI QRMEESGQAI DFNALLDRLS VQSSGGPPRG W
101: EGLSSRLSQL ELYCYNLDKT IGEMRSDLSR DNEEAHVKLR SLDKHLQEVH RSVQVLRDKQ ELADTQKELA RLQLVSKDSS SSSHSQHGEE RVATPVPEHK
201: KNENTSDAPN LQLALALPHQ IAPQPPAQPQ QQQQQYYMPP ATQLQNTPAP APVPPPPSQP QAPPAQARFM PPPAAPSHPS SAQTQSFTQY QQNWPPQPQA
301: RPQSSGAYQP YTPAPPSNQS PVEPLPGSMQ MQSPYGGPPQ QSMQAYGYGA PPPQAPQQTK MSYNPQTGDG YLPSGPPPPG YASAMYEDGR MQYPPPQPQQ
401: QQQGHYMQGP PGGGYAPQQH QAGGGGNTGT PSPVLRSKYG ELIEKLVSMG FRGDHVMAVI QRMEESGQAI DFNALLDRLS VQSSGGPPRG W
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.