Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G292600.1 | Wheat | nucleus | 97.01 | 96.53 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 93.2 | 93.2 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 81.92 | 81.52 |
| Os01t0754500-01 | Rice | nucleus | 59.37 | 60.27 |
| Zm00001d012728_P001 | Maize | nucleus | 56.55 | 58.39 |
| EES03625 | Sorghum | nucleus | 56.38 | 57.92 |
| KRH55962 | Soybean | nucleus | 15.75 | 46.57 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 36.15 | 45.7 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 11.44 | 45.7 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 33.66 | 41.01 |
| KRH25575 | Soybean | nucleus | 34.16 | 38.58 |
| CDX89188 | Canola | nucleus | 30.02 | 38.51 |
| AT4G28300.1 | Thale cress | nucleus | 31.51 | 38.31 |
| Bra026268.1-P | Field mustard | nucleus | 30.02 | 38.03 |
| Bra010376.1-P | Field mustard | nucleus | 30.85 | 37.88 |
| CDY14248 | Canola | nucleus | 30.85 | 37.88 |
| CDY18985 | Canola | nucleus | 29.85 | 37.58 |
| CDY25250 | Canola | nucleus | 30.51 | 37.4 |
| Bra024211.1-P | Field mustard | nucleus | 30.18 | 37.37 |
| CDY29896 | Canola | nucleus | 30.18 | 37.37 |
| Solyc07g053990.2.1 | Tomato | nucleus | 30.85 | 37.35 |
| CDY67879 | Canola | nucleus | 29.52 | 37.24 |
| CDX97433 | Canola | nucleus | 30.35 | 37.2 |
| PGSC0003DMT400047245 | Potato | nucleus | 31.68 | 35.57 |
| PGSC0003DMT400034191 | Potato | nucleus | 31.84 | 35.04 |
| Solyc10g008340.2.1 | Tomato | extracellular | 31.51 | 34.86 |
| KRH55961 | Soybean | cytosol | 15.42 | 34.07 |
| KRH26948 | Soybean | nucleus | 29.85 | 33.83 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 18.91 | 32.57 |
| KRH22387 | Soybean | nucleus | 28.86 | 32.4 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 26.7 | 30.49 |
| TraesCS3B01G305700.1 | Wheat | plastid | 24.71 | 27.8 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 20.73 | 20.73 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 19.24 | 20.07 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G327600.1 | EnsemblPlantsGene:TraesCS3B01G327600 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 |
| PFAM:PF07223 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:528172848..528177526
Molecular Weight (calculated)
66397.8 Da
IEP (calculated)
6.894
GRAVY (calculated)
-1.011
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSGGPSGR GSAGGTRSFD FGTDDVLCSY DDFAAPSEPK RPDPVDKDFH ESRFGRPSVK VYEQESYAKE DVLSAVEKCM KKYADNLLRS LEGITSRLSQ
101: LEIYCYKLER SIGELRADVL RDETDLRLKS LEKHLHEVHR SIQILRDKQE LADTQKELAK FQLTHDESKK KDVLTPSFPE PKKPEEKRDA ASQQLALALP
201: HQVNSSTLVP RASGPVQQYN DQSVQQTAPS SLVPQQDRYA VSQAIVYYPQ HQATGNQDTQ GQQVQQEVQY LPVRAQAPDA HASSQPQSAN QSQPQSYTPY
301: QQQWQQQQPS RSSPAPVAQQ QQPFSQPFPP PVQQPQLSNA HQFPTQPAQQ SQVSNVQQFP TQPAQQSQLS NPQQFPPQQL QPQQSNPHLP QTAQPQHPHV
401: QTQMRPPTPP PNYSGGYPPH QPLNPSPETL PGSAAMQGPY NTVAPSGGSH SEVQYSYGGP GIPPSQPPPQ HNMQRQQLPP PGQGSFGPPP SKGAYPPQYA
501: PQGHPQGYNT SYGGYPPNDP SAAQAPQMPP GGVGVSHPGS SHHHMMRGHP YGDMIEKAIT MGYPRDQVLN VIQRMTDSGQ QIDFNALLDR LNESGSGAPP
601: RPW
101: LEIYCYKLER SIGELRADVL RDETDLRLKS LEKHLHEVHR SIQILRDKQE LADTQKELAK FQLTHDESKK KDVLTPSFPE PKKPEEKRDA ASQQLALALP
201: HQVNSSTLVP RASGPVQQYN DQSVQQTAPS SLVPQQDRYA VSQAIVYYPQ HQATGNQDTQ GQQVQQEVQY LPVRAQAPDA HASSQPQSAN QSQPQSYTPY
301: QQQWQQQQPS RSSPAPVAQQ QQPFSQPFPP PVQQPQLSNA HQFPTQPAQQ SQVSNVQQFP TQPAQQSQLS NPQQFPPQQL QPQQSNPHLP QTAQPQHPHV
401: QTQMRPPTPP PNYSGGYPPH QPLNPSPETL PGSAAMQGPY NTVAPSGGSH SEVQYSYGGP GIPPSQPPPQ HNMQRQQLPP PGQGSFGPPP SKGAYPPQYA
501: PQGHPQGYNT SYGGYPPNDP SAAQAPQMPP GGVGVSHPGS SHHHMMRGHP YGDMIEKAIT MGYPRDQVLN VIQRMTDSGQ QIDFNALLDR LNESGSGAPP
601: RPW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.