Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009045.1-P | |
| Bra013826.1-P | |
| Bra017054.1-P | |
| Bra031892.1-P | |
| Bra036832.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29896 | Canola | nucleus | 100.0 | 100.0 |
| Bra026268.1-P | Field mustard | nucleus | 77.41 | 79.2 |
| Bra010376.1-P | Field mustard | nucleus | 76.39 | 75.76 |
| AT4G28300.1 | Thale cress | nucleus | 76.8 | 75.4 |
| KRH55962 | Soybean | nucleus | 25.46 | 60.78 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 18.28 | 58.94 |
| Solyc07g053990.2.1 | Tomato | nucleus | 48.46 | 47.39 |
| PGSC0003DMT400047245 | Potato | nucleus | 49.9 | 45.25 |
| KRH25575 | Soybean | nucleus | 48.87 | 44.57 |
| PGSC0003DMT400034191 | Potato | nucleus | 49.08 | 43.61 |
| Solyc10g008340.2.1 | Tomato | extracellular | 48.25 | 43.12 |
| KRH26948 | Soybean | nucleus | 42.3 | 38.72 |
| KRH22387 | Soybean | nucleus | 41.48 | 37.62 |
| KRH55961 | Soybean | cytosol | 20.74 | 37.0 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 24.44 | 34.0 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 33.06 | 33.75 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 38.4 | 31.01 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 31.01 | 30.51 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 37.78 | 30.36 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 37.58 | 30.2 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 37.37 | 30.18 |
| Zm00001d012728_P001 | Maize | nucleus | 35.93 | 29.97 |
| EES03625 | Sorghum | nucleus | 35.32 | 29.3 |
| Os01t0754500-01 | Rice | nucleus | 35.73 | 29.29 |
| Os05t0561600-01 | Rice | plastid | 24.85 | 23.36 |
| OQU78421 | Sorghum | plastid | 24.23 | 22.74 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 24.64 | 22.6 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 24.44 | 22.5 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 24.02 | 22.41 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 24.44 | 22.41 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 23.41 | 21.59 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.41 | 21.27 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 19.71 | 21.1 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.2 | 21.08 |
| Zm00001d038998_P001 | Maize | plastid | 22.38 | 20.8 |
| TraesCS3A01G272000.1 | Wheat | plastid | 22.59 | 20.68 |
| Bra023474.1-P | Field mustard | nucleus | 22.18 | 20.15 |
| EES03419 | Sorghum | nucleus | 21.97 | 19.89 |
| Zm00001d043906_P002 | Maize | nucleus | 21.97 | 19.49 |
| Zm00001d011562_P003 | Maize | plastid | 20.53 | 17.3 |
Protein Annotations
Description
AT4G28300 (E=4e-130) | hydroxyproline-rich glycoprotein family protein
Coordinates
chrA03:+:26854213..26855892
Molecular Weight (calculated)
53341.7 Da
IEP (calculated)
6.188
GRAVY (calculated)
-1.018
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGRVNSGF DFGSDDILRT YDDFTNNQDS SNGSNSDPSI AATNNFNKEF HKTRMARSSV FPTSSYSPPE DSLSQDVTAT VERTMKKYTD NVMRFLEGIS
101: SRLSQLELYC YNLDKTIGEM RSDLTRDNEE ADVKLRSMEK HLQEVRRSVQ ILRDKQELAD TQKDLARLQV VQKDSSSPSH SQKSEETPVP EAKKTESSSD
201: AHNQQLALAL PHQIPPAQPQ PQPQQQQQYY MSPTPQLQNT PAPVPAPPSQ PQAPPAQAQF MPPPPAPSHP SSAQTQSFPQ YQQNWPPQPQ ARPQSSGGYP
301: TYSPAPPSNQ SPVEPSPGSM QMPSPYGGPP QQSMQGYGYS APPPPPQAPQ QTKMSYSHQT GDAYVPSGPP PPPGYANAMY EGGRMQYPPP QPPPPQQQQG
401: QHYMQGPQGG GYAPQQHQAG GGSTGTPSPV MRSKYGELIE KLVSMGFRGD HVMSVIQRME ESGQPIDFNA LLDRLSVQSS GGPPRGW
101: SRLSQLELYC YNLDKTIGEM RSDLTRDNEE ADVKLRSMEK HLQEVRRSVQ ILRDKQELAD TQKDLARLQV VQKDSSSPSH SQKSEETPVP EAKKTESSSD
201: AHNQQLALAL PHQIPPAQPQ PQPQQQQQYY MSPTPQLQNT PAPVPAPPSQ PQAPPAQAQF MPPPPAPSHP SSAQTQSFPQ YQQNWPPQPQ ARPQSSGGYP
301: TYSPAPPSNQ SPVEPSPGSM QMPSPYGGPP QQSMQGYGYS APPPPPQAPQ QTKMSYSHQT GDAYVPSGPP PPPGYANAMY EGGRMQYPPP QPPPPQQQQG
401: QHYMQGPQGG GYAPQQHQAG GGSTGTPSPV MRSKYGELIE KLVSMGFRGD HVMSVIQRME ESGQPIDFNA LLDRLSVQSS GGPPRGW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.