Factsheet for Bra017054.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013179.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39740.1	Bra013179.1-P	AT2G05230.1	21798944
AT2G39740.1	Bra013179.1-P	AT2G05250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07030	Canola	cytosol	99.21	99.21
AT2G39740.1	Thale cress	cytosol	78.22	77.3
Solyc06g051780.2.1	Tomato	cytosol	26.73	56.25
VIT_13s0019g02230.t01	Wine grape	cytosol	44.75	49.89
PGSC0003DMT400061199	Potato	cytosol	27.52	49.64
KRG97851	Soybean	cytosol	39.6	48.19
Os01t0846450-01	Rice	cytosol	19.01	46.6
KRH31028	Soybean	cytosol	38.61	42.86
GSMUA_Achr6P34020_001	Banana	cytosol	34.26	41.19
Os01t0846500-02	Rice	cytosol	30.89	40.94
OQU87849	Sorghum	cytosol	32.87	32.74
TraesCS3B01G394900.1	Wheat	cytosol	30.69	31.96
Zm00001d042885_P006	Maize	nucleus	30.5	26.51
KXG33685	Sorghum	nucleus	29.9	25.0
TraesCS3B01G394800.1	Wheat	nucleus	31.88	24.81
TraesCS3A01G362300.1	Wheat	nucleus	31.68	24.69
TraesCS3D01G356000.1	Wheat	nucleus	31.68	24.32
Bra038277.1-P	Field mustard	cytosol	17.23	19.16
Bra039325.1-P	Field mustard	nucleus	14.65	9.74

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.10.2.6.1	Gene3D:3.30.460.10	EnsemblPlantsGene:Bra017054	EnsemblPlants:Bra017054.1	EnsemblPlants:Bra017054.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538	GO:GO:0040029
GO:GO:0050265	GO:GO:0060964	GO:GO:0071076	UniProt:M4DKM3	PANTHER:PTHR12271	PANTHER:PTHR12271:SF94
SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0002544D64	SEG:seg	:	:

Description

AT2G39740 (E=3e-178) | unknown protein

Coordinates

chrA04:+:16887675..16889708

Molecular Weight (calculated)

56798.5 Da

IEP (calculated)

11.153

GRAVY (calculated)

-0.547

Length

505 amino acids

Sequence
(BLAST)

001: MNRNPVLDPT LQEILQVVKP TRADWDTRIS VLDQLRNVLQ SVESLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LAQLLRAMRA
101: SGLWYRLQFV IHARVPILKV VSGHQRISCD ISIDNLEGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHD INNPKNGTFN SYSLSLLVIF HLQTCVPAIL
201: PPLGEIYPRS AVDDLKGVRK TAEESIAQLS AANIARFKSG SSRSVNRSSL SELLLSFFAK FSDINLKATE LGVCPFTGRW ENISNNTRWL PKTYSLFVED
301: PFEQPENAAR SVSRKNLDRI AQVFEMTSRR LATDSNRNSI IGVLTAPHIS QSLVRTTNVQ NHHHHANGAR HPHSPQGQAR PWNHQMQQNW SPSNNIQNPP
401: YWPGPARPRP QQNWTSQNNP RNMQQGQAPF QGQTRPVMTQ TQTQQQQQKS QYKNGKQPMT NAPSGSSQSQ GQIGKPPGQV NGVSFARPAG PISQSQRGQV
501: WRPRG

Best Arabidopsis Sequence Match ( AT2G39740.3 )
(BLAST)

001: MSRNPFLDPT LQEILQVIKP TRADRDTRIT VIDQLRDVLQ SVECLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LGHLLRALRA
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q

Arabidopsis Description

HESO1Protein HESO1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XET5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.