Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G394800.1 | Wheat | nucleus | 93.01 | 94.3 |
| TraesCS3A01G362300.1 | Wheat | nucleus | 83.59 | 84.88 |
| Os01t0846450-01 | Rice | cytosol | 20.67 | 66.02 |
| KXG33685 | Sorghum | nucleus | 49.09 | 53.48 |
| Zm00001d042885_P006 | Maize | nucleus | 45.59 | 51.64 |
| Solyc06g051780.2.1 | Tomato | cytosol | 16.11 | 44.17 |
| GSMUA_Achr6P34020_001 | Banana | cytosol | 27.05 | 42.38 |
| PGSC0003DMT400061199 | Potato | cytosol | 17.48 | 41.07 |
| KRG97851 | Soybean | cytosol | 22.19 | 35.18 |
| VIT_13s0019g02230.t01 | Wine grape | cytosol | 22.95 | 33.33 |
| KRH31028 | Soybean | cytosol | 22.19 | 32.09 |
| AT2G39740.1 | Thale cress | cytosol | 24.77 | 31.9 |
| Bra017054.1-P | Field mustard | cytosol | 24.32 | 31.68 |
| CDY07030 | Canola | cytosol | 24.16 | 31.49 |
| CDX93239 | Canola | cytosol | 24.16 | 31.49 |
| TraesCS4D01G002900.1 | Wheat | nucleus, peroxisome, plastid | 13.37 | 15.69 |
| TraesCS7D01G279400.1 | Wheat | cytosol | 13.37 | 15.63 |
| TraesCS1D01G133800.1 | Wheat | nucleus, plastid | 10.64 | 8.45 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G356000.1 | EnsemblPlantsGene:TraesCS3D01G356000 | Gene3D:1.10.1410.10 | Gene3D:3.30.460.10 | PANTHER:PTHR12271 | PANTHER:PTHR12271:SF94 |
| SEG:seg | SUPFAM:SSF81301 | SUPFAM:SSF81631 | TIGR:cd05402 | MapMan:16.10.2.6.1 | : |
Description
No Description!
Coordinates
chr3D:+:467767144..467771233
Molecular Weight (calculated)
73493.1 Da
IEP (calculated)
9.399
GRAVY (calculated)
-0.727
Length
658 amino acids
Sequence
(BLAST)
(BLAST)
001: MIELVPNNDV LEKCIKDILS QIKPAEDDLN RRLSAIKELE VSMQPVAVLK GAAAKPFGSF LSNLYSKSGD LDISVQLMNS SNLPINKKKK ISILKAVRTA
101: LQKGGVYGYM EFIPQARVPV LQYVSNRFGI SCDLSVDNYP GRIKSKIFYW ISTLDERFGD MVLLIKEWAK AQNINDPKSG TLNSYSLCLL VLFHFQTCEP
201: AILPPLEDIY EGNITEDFAD MTLYNEEHLD EVCAANIAKF QSQNKEQRNE SSLCHLLETF FHKFCHIDSL SSDVISTYTG QFKKIQDIPI RRKKPYSLFV
301: EDPVERPDNA ARAVGERGLL LIASAFSDAK NKLASLEHTD RNDLLAMLST PGVCSKLGGR VIANNYTNTP QRTRQHLINV GAKVSNNQRR PRAKGFTGSR
401: PVKNPTQANT VQNPTQVNTV QNPTQVSTDT AGRQTPGHYR NHDPPQVYAN AAVHQPSRQP GLYTNHYPPS AYTPGRQTTG SYPSQSHPQA HTKWGPTGVP
501: YESHNHQPAY TPVYQGARPY YYPSQQQLHT SGFQTPGSYQ YEYQSQSPVH TGGIQRPGPY NYHSQPQGHT TGVHTPGQYQ NGYYNQPAYT AGQGSHQNWR
601: GAQYTPDHQT NRYNRNGVAT RHEPVAGGLQ NGPARARDSR SQASSGRTEW RGSSQHQT
101: LQKGGVYGYM EFIPQARVPV LQYVSNRFGI SCDLSVDNYP GRIKSKIFYW ISTLDERFGD MVLLIKEWAK AQNINDPKSG TLNSYSLCLL VLFHFQTCEP
201: AILPPLEDIY EGNITEDFAD MTLYNEEHLD EVCAANIAKF QSQNKEQRNE SSLCHLLETF FHKFCHIDSL SSDVISTYTG QFKKIQDIPI RRKKPYSLFV
301: EDPVERPDNA ARAVGERGLL LIASAFSDAK NKLASLEHTD RNDLLAMLST PGVCSKLGGR VIANNYTNTP QRTRQHLINV GAKVSNNQRR PRAKGFTGSR
401: PVKNPTQANT VQNPTQVNTV QNPTQVSTDT AGRQTPGHYR NHDPPQVYAN AAVHQPSRQP GLYTNHYPPS AYTPGRQTTG SYPSQSHPQA HTKWGPTGVP
501: YESHNHQPAY TPVYQGARPY YYPSQQQLHT SGFQTPGSYQ YEYQSQSPVH TGGIQRPGPY NYHSQPQGHT TGVHTPGQYQ NGYYNQPAYT AGQGSHQNWR
601: GAQYTPDHQT NRYNRNGVAT RHEPVAGGLQ NGPARARDSR SQASSGRTEW RGSSQHQT
001: MSRNPFLDPT LQEILQVIKP TRADRDTRIT VIDQLRDVLQ SVECLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LGHLLRALRA
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q
Arabidopsis Description
HESO1Protein HESO1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XET5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.