Factsheet for VIT_13s0019g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39740.1	VIT_12s0057g00710.t01	AT2G05230.1	21798944
AT2G39740.1	VIT_12s0057g00710.t01	AT2G05250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051780.2.1	Tomato	cytosol	34.22	64.58
PGSC0003DMT400061199	Potato	cytosol	35.54	57.5
KRG97851	Soybean	cytosol	50.77	55.42
KRH31028	Soybean	cytosol	50.11	49.89
Os01t0846450-01	Rice	cytosol	20.53	45.15
Bra017054.1-P	Field mustard	cytosol	49.89	44.75
CDY07030	Canola	cytosol	49.89	44.75
CDX93239	Canola	cytosol	49.67	44.55
AT2G39740.1	Thale cress	cytosol	49.67	44.03
Os01t0846500-02	Rice	cytosol	35.54	42.26
GSMUA_Achr6P34020_001	Banana	cytosol	38.85	41.9
OQU87849	Sorghum	cytosol	35.1	31.36
TraesCS3B01G394900.1	Wheat	cytosol	31.79	29.69
Zm00001d042885_P006	Maize	nucleus	32.89	25.65
KXG33685	Sorghum	nucleus	32.89	24.67
TraesCS3A01G362300.1	Wheat	nucleus	33.77	23.61
TraesCS3B01G394800.1	Wheat	nucleus	33.77	23.57
TraesCS3D01G356000.1	Wheat	nucleus	33.33	22.95
VIT_07s0031g02870.t01	Wine grape	cytosol	21.41	17.48
VIT_15s0048g01340.t01	Wine grape	nucleus	16.11	10.1

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100247843	wikigene:100247843	MapMan:16.10.2.6.1	Gene3D:3.30.460.10	ProteinID:CBI31624
ProteinID:CBI31624.3	UniProt:D7TLN7	EMBL:FN595998	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0019538	GO:GO:0040029	GO:GO:0050265	GO:GO:0060964	GO:GO:0071076	EntrezGene:LOC100247843
wikigene:LOC100247843	PFAM:PF01909	PANTHER:PTHR12271	PANTHER:PTHR12271:SF94	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI0001BE3DBE	ArrayExpress:VIT_13s0019g02230	EnsemblPlantsGene:VIT_13s0019g02230	EnsemblPlants:VIT_13s0019g02230.t01	RefSeq:XP_002277771
RefSeq:XP_002277771.2	RefSeq:XP_010658527.1	RefSeq:XP_010658528.1	:	:	:

Description

No Description!

Coordinates

chr13:+:3493362..3507712

Molecular Weight (calculated)

51524.1 Da

IEP (calculated)

10.711

GRAVY (calculated)

-0.506

Length

453 amino acids

Sequence
(BLAST)

001: MSTFNVLEIV LKDILLVINP SREDWAIRNQ LIADFRTAVD SVESLRGATV EPFGSFLSNL YTQWGDLDIS IELPNGAYIS SAGKRHKQTL LGHVLNALRS
101: KGGWRKLQFI PNARVPIIKF ESYHPNISCD VSINNLKGQM KSKFLFWISG IDGRFRDLVL LVKEWARAHD INNSKTGTLN SYSLSLLVVF HLQTCRPAIL
201: PPLKEIYPGN VADDLIGVRA VVEGQIEETS AANINRFKRD RSRAPNRSSL SELFISFLAK FVDITSRASE QGICPYTGQW VDIDSNMRWM PRTYELFVED
301: PFEQPENTAR GVRSRQLQRI SEAFQTTHQR LTSANQDQHS LIDTLVRPQI AQFIRRAPSR NSSAYGRNNS RTYPSVPNVA NSPLQFQNDF QNRRPQSRPN
401: TTSQRSAPVQ ARPNSVTMQR SMYTRPGSST VQRSVQQATQ SQSQRVWRPR SDR

Best Arabidopsis Sequence Match ( AT2G39740.3 )
(BLAST)

001: MSRNPFLDPT LQEILQVIKP TRADRDTRIT VIDQLRDVLQ SVECLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LGHLLRALRA
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q

Arabidopsis Description

HESO1Protein HESO1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XET5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.