Factsheet for PGSC0003DMT400061199

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400092645

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39740.1	PGSC0003DMT400092645	AT2G05230.1	21798944
AT2G39740.1	PGSC0003DMT400092645	AT2G05250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051780.2.1	Tomato	cytosol	73.93	86.25
Os01t0846450-01	Rice	cytosol	35.71	48.54
KRG97851	Soybean	cytosol	58.21	39.28
KRH31028	Soybean	cytosol	58.21	35.82
VIT_13s0019g02230.t01	Wine grape	cytosol	57.5	35.54
Os01t0846500-02	Rice	cytosol	43.57	32.02
GSMUA_Achr6P34020_001	Banana	cytosol	45.36	30.24
AT2G39740.1	Thale cress	cytosol	53.21	29.16
CDY07030	Canola	cytosol	50.0	27.72
Bra017054.1-P	Field mustard	cytosol	49.64	27.52
CDX93239	Canola	cytosol	49.29	27.33
OQU87849	Sorghum	cytosol	42.86	23.67
TraesCS3B01G394900.1	Wheat	cytosol	40.0	23.09
Zm00001d042885_P006	Maize	nucleus	41.43	19.97
KXG33685	Sorghum	nucleus	41.07	19.04
TraesCS3B01G394800.1	Wheat	nucleus	41.43	17.87
TraesCS3D01G356000.1	Wheat	nucleus	41.07	17.48
TraesCS3A01G362300.1	Wheat	nucleus	40.36	17.44
PGSC0003DMT400076240	Potato	nucleus	27.14	12.36
PGSC0003DMT400000387	Potato	plastid	21.07	8.32
PGSC0003DMT400059048	Potato	plastid	9.64	7.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400061199	EnsemblPlantsGene:PGSC0003DMG401023823	Gene3D:1.10.1410.10	Gene3D:3.30.460.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016779	InterPro:Polymerase_NTP_transf_dom	PANTHER:PTHR12271	PANTHER:PTHR12271:SF94	PFAM:PF01909
PGSC:PGSC0003DMG401023823	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000295EEEA	UniProt:M1C780	MapMan:16.10.2.6.1

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG401023823]

Coordinates

chr6:-:25001999..25005427

Molecular Weight (calculated)

31694.8 Da

IEP (calculated)

8.140

GRAVY (calculated)

0.145

Length

280 amino acids

Sequence
(BLAST)

001: MNCYSLLEHT LQNILHSINP LEEDWSMRFQ LIHELRAVVE SIEILRGATV EPFGSFVSNL FTRWGDLDIS IELPNGSHIS AAGKKYKLSL LGDVLKALRA
101: KGGCRKLQFI TNARVPILKF QGNYNISCDI SINNLSGQMK SKILYWINMI DGRFRDMVLL VKEWAKAHNI NDSKTGTLNS YSLSLLVVFH FQTCVPAILP
201: PLKEIYPGSM VDDLTGTYND CLLLFEYADP SFCVKFTVLL LGRELFTSDN YIVVLCPRKS GGICLWNFPF SKGCKISFYL

Best Arabidopsis Sequence Match ( AT2G39740.3 )
(BLAST)

001: MSRNPFLDPT LQEILQVIKP TRADRDTRIT VIDQLRDVLQ SVECLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LGHLLRALRA
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q

Arabidopsis Description

HESO1Protein HESO1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XET5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.