Factsheet for PGSC0003DMT400059048

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g044900.1.1	Tomato	cytosol	86.56	58.33
VIT_07s0031g02870.t01	Wine grape	cytosol	31.99	21.44
PGSC0003DMT400076240	Potato	nucleus	34.68	20.98
CDX99148	Canola	cytosol	25.27	20.66
Os09t0570600-01	Rice	cytosol	17.2	20.65
Bra038277.1-P	Field mustard	cytosol	25.0	20.48
KRH53978	Soybean	cytosol	19.89	19.68
CDX86037	Canola	cytosol	23.66	18.84
Zm00001d019808_P003	Maize	cytosol	12.9	18.68
OQU89042	Sorghum	cytosol	23.92	17.87
TraesCS4A01G311100.1	Wheat	nucleus	25.27	16.91
TraesCS7D01G279400.1	Wheat	cytosol	25.54	16.87
TraesCS7B01G180400.1	Wheat	cytosol	25.54	16.87
TraesCS4B01G003200.1	Wheat	nucleus	25.27	16.58
Os08t0559900-01	Rice	nucleus	25.81	16.52
TraesCS7A01G280800.1	Wheat	cytosol	24.73	16.37
TraesCS4D01G002900.1	Wheat	nucleus, peroxisome, plastid	24.19	16.04
HORVU4Hr1G000070.38	Barley	cytosol	23.92	15.37
AT3G45760.1	Thale cress	nucleus	18.82	14.77
OQU80706	Sorghum	nucleus	26.08	14.06
Zm00001d049928_P005	Maize	nucleus	25.81	13.91
AT3G45750.1	Thale cress	cytosol	25.0	13.64
PGSC0003DMT400061199	Potato	cytosol	7.26	9.64
Zm00001d019809_P001	Maize	mitochondrion	7.26	8.23
PGSC0003DMT400000387	Potato	plastid	10.48	5.5

Protein Annotations

EnsemblPlants:PGSC0003DMT400059048	EnsemblPlantsGene:PGSC0003DMG400022934	Gene3D:1.10.1410.10	PANTHER:PTHR12271	PANTHER:PTHR12271:SF38	PGSC:PGSC0003DMG400022934
SUPFAM:SSF81631	UniParc:UPI0002958822	UniProt:M1C3Q4	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022934]

Coordinates

chr11:+:31202836..31207743

Molecular Weight (calculated)

41104.1 Da

IEP (calculated)

10.457

GRAVY (calculated)

-0.365

Length

372 amino acids

Sequence
(BLAST)

001: MKAWAKAQNI NSAKDQTLNS LSIILLVAFH LQTRNPPILP PFSALFRDGN DSVAVESSVC KFSNYGISNK ESVAELFVSL LNKLLSVEKL WSEGLCASTF
101: EGSWISQTRG FGVGRINVED FTDRSQNVAR AVGEAEVKKI YSCIQLSVQH IFDFLNKKIG GNSLREFLFG QDVASKLAGT GTAKSIAIGV QARASGKKEV
201: QSVALSKGNK KTVHVDSILT KSRTSARSPR GMAQGKRKLL GPTDSSLTKR SRTDDWLGGT FSELSRRQPG QQPMPYYLTN SWEPVAMISR EAMYNRPQPV
301: SFEPTYGRMR FAEPSGHPNL IAPAVPHMFP SRPLIGSQIS YEPLRHPVGY PNSVYDSRHS SAYFLPPHPR RL

Best Arabidopsis Sequence Match ( AT3G45750.5 )
(BLAST)

001: MSEESSPVLE AYGSFVMDMY SSQSDLDVSI NFGNGTSEIP REKKLEILKR FAKKLRSLQG EGQVKNVESI FSAKVPIVKF SDQGTGVECD LSVENKDGIL
101: NSQIVRIISQ IDGRFQKLCL LVKHWAKAHE VNSALHRTLN SVSITLLVAL HLQTQNPPIL PPFSMLLKDG MDPPNVEKRA QKFLNWGQRN QESLGRLFAT
201: FFIKLQSVEF LWRQGLCVSV LNGLWISKKW KKVGVGSISV EDFTNISQNV ARRVNGAGAK KIYSSINRTV EDIFEFLNDK VAGTDLRHRL FGKGSVVQIP
301: PVAPLNGKTA GIHKVSGQQA VVQPSPPVPR LNGKIAGTHR KQKVFAQQAV VEPRPPVLPL NGNIAGTHFR HESFRQQAVL QPLPPLRPVN GSIGGTHFRD
401: RLFDQQVLVE PRPLLPPFSG SIAETHFRHR SFPQEAVLDP RPSVQSRNVY SQQLHNNYRN GFSGPPEEHH TKRLCLGNRY RALEETGNWR EEERYEDPRG
501: KRNRYVGNFN GLEEFREIPR FGIHSNPLDD PYRQVPLNAG TNGHLVHHRH DGRYNGEEPM HVGQWQDYTR RVGSPPLQQT PPPYDRVSYE DFRPHLGRSF
601: YH

Arabidopsis Description

Nucleotidyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y216]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.