Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99148 | Canola | cytosol | 92.08 | 94.51 |
| AT3G45760.1 | Thale cress | nucleus | 51.39 | 50.63 |
| AT3G45750.1 | Thale cress | cytosol | 60.39 | 41.35 |
| KRH53978 | Soybean | cytosol | 30.41 | 37.77 |
| Os09t0570600-01 | Rice | cytosol | 22.7 | 34.19 |
| Zm00001d019808_P003 | Maize | cytosol | 17.77 | 32.3 |
| VIT_07s0031g02870.t01 | Wine grape | cytosol | 34.48 | 29.01 |
| OQU89042 | Sorghum | cytosol | 30.19 | 28.31 |
| TraesCS4B01G003200.1 | Wheat | nucleus | 33.19 | 27.34 |
| Solyc11g044900.1.1 | Tomato | cytosol | 32.12 | 27.17 |
| TraesCS4A01G311100.1 | Wheat | nucleus | 32.33 | 27.16 |
| TraesCS4D01G002900.1 | Wheat | nucleus, peroxisome, plastid | 32.12 | 26.74 |
| Os08t0559900-01 | Rice | nucleus | 32.76 | 26.33 |
| HORVU4Hr1G000070.38 | Barley | cytosol | 32.55 | 26.25 |
| TraesCS7A01G280800.1 | Wheat | cytosol | 31.26 | 25.98 |
| TraesCS7B01G180400.1 | Wheat | cytosol | 30.62 | 25.4 |
| TraesCS7D01G279400.1 | Wheat | cytosol | 30.62 | 25.4 |
| PGSC0003DMT400076240 | Potato | nucleus | 33.19 | 25.2 |
| PGSC0003DMT400059048 | Potato | plastid | 18.84 | 23.66 |
| Solyc09g091860.2.1 | Tomato | nucleus | 33.62 | 23.43 |
| OQU80706 | Sorghum | nucleus | 33.62 | 22.75 |
| Zm00001d049928_P005 | Maize | nucleus | 31.91 | 21.59 |
| CDY07030 | Canola | cytosol | 18.63 | 17.23 |
| CDX93239 | Canola | cytosol | 18.2 | 16.83 |
| CDY37053 | Canola | nucleus | 18.2 | 11.74 |
| CDY27369 | Canola | nucleus | 17.77 | 11.53 |
| Zm00001d019809_P001 | Maize | mitochondrion | 7.92 | 11.28 |
Protein Annotations
| EnsemblPlants:CDX86037 | EnsemblPlantsGene:GSBRNA2T00143982001 | Gene3D:1.10.1410.10 | Gene3D:3.30.460.10 | PANTHER:PTHR12271 | PANTHER:PTHR12271:SF38 |
| ProteinID:CDX86037 | ProteinID:CDX86037.1 | SEG:seg | SUPFAM:SSF81301 | SUPFAM:SSF81631 | UniParc:UPI0004EF34DC |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g55520D
Coordinates
chrLK031844:-:427795..430349
Molecular Weight (calculated)
53064.6 Da
IEP (calculated)
9.483
GRAVY (calculated)
-0.403
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRSGVAEE NTVSSKGIRK KVKNSESVAL QRYKIDTYNL VDLDKVLNDV YCSCRPVSAD YEARKDTLKH INALAFDIYG DSKGGRPVLK AYGSFAMDMF
101: FARSDLDVSI NFGDGVSELP RDSKLQILER FAEKLRSLQG EGHVRNVVSI LSARVPIVRF LDQRTSVECD LAVDSKESVL NSRIIQIISQ IDDRFQKLCL
201: LIKHWAKAHD VNSALRNTLN SISITLLVAH HLQTQDPPIL PPFSLLFKGN IITYSKFKRT QEFLNREKRN KESLGRLFVT FFVKLQSVEF LWRQGLCVSL
301: RSGLWISKRW RRAGVGINVE DFLDVSQNVA RVVNDRGAKK IYSSINQTVE ELFEFLNGKI DGAHLKDKLF VPQPLVEPPP PPPAPQVEVY HQPPHHIYRC
401: DEFKGHHNKR PRFGNGDHIT VRHRHGGEEP IHAAGDDSHA IDLPPPPPPF GRVYRIYCDK FGPQNLP
101: FARSDLDVSI NFGDGVSELP RDSKLQILER FAEKLRSLQG EGHVRNVVSI LSARVPIVRF LDQRTSVECD LAVDSKESVL NSRIIQIISQ IDDRFQKLCL
201: LIKHWAKAHD VNSALRNTLN SISITLLVAH HLQTQDPPIL PPFSLLFKGN IITYSKFKRT QEFLNREKRN KESLGRLFVT FFVKLQSVEF LWRQGLCVSL
301: RSGLWISKRW RRAGVGINVE DFLDVSQNVA RVVNDRGAKK IYSSINQTVE ELFEFLNGKI DGAHLKDKLF VPQPLVEPPP PPPAPQVEVY HQPPHHIYRC
401: DEFKGHHNKR PRFGNGDHIT VRHRHGGEEP IHAAGDDSHA IDLPPPPPPF GRVYRIYCDK FGPQNLP
001: MGSRGNVAED KNVSSKVIRK KVNNTVSIAL KRYKIDSYIL LDLDKVLNDV YCSFRPVSAD YNTRKELVKN LNTMALDIYG KSEESSPVLE AYGSFVMDMY
101: SSQSDLDVSI NFGNGTSEIP REKKLEILKR FAKKLRSLQG EGQVKNVESI FSAKVPIVKF SDQGTGVECD LSVENKDGIL NSQIVRIISQ IDGRFQKLCL
201: LVKHWAKAHE VNSALHRTLN SVSITLLVAL HLQTQNPPIL PPFSMLLKDG MDPPNVEKRA QKFLNWGQRN QESLGRLFAT FFIKLQSVEF LWRQGLCVSV
301: LNGLWISKKW KKVGVGSISV EDFTNISQNV ARRVNGAGAK KIYSSINRTV EDIFEFLNDK VAGTDLRHRL FGKGSVVQIP PVAPLNGKTA GIHKVSGQQA
401: VVQPSPPVPR LNGKIAGTHR KQKVFAQQAV VEPRPPVLPL NGNIAGTHFR HESFRQQAVL QPLPPLRPVN GSIGGTHFRD RLFDQQVLVE PRPLLPPFSG
501: SIAETHFRHR SFPQEAVLDP RPSVQSRNVY SQQLHNNYRN GFSGPPEEHH TKRLCLGNRY RALEETGNWR EEERYEDPRG KRNRYVGNFN GLEEFREIPR
601: FGIHSNPLDD PYRQVPLNAG TNGHLVHHRH DGRYNGEEPM HVGQWQDYTR RVGSPPLQQT PPPYDRVSYE DFRPHLGRSF YH
101: SSQSDLDVSI NFGNGTSEIP REKKLEILKR FAKKLRSLQG EGQVKNVESI FSAKVPIVKF SDQGTGVECD LSVENKDGIL NSQIVRIISQ IDGRFQKLCL
201: LVKHWAKAHE VNSALHRTLN SVSITLLVAL HLQTQNPPIL PPFSMLLKDG MDPPNVEKRA QKFLNWGQRN QESLGRLFAT FFIKLQSVEF LWRQGLCVSV
301: LNGLWISKKW KKVGVGSISV EDFTNISQNV ARRVNGAGAK KIYSSINRTV EDIFEFLNDK VAGTDLRHRL FGKGSVVQIP PVAPLNGKTA GIHKVSGQQA
401: VVQPSPPVPR LNGKIAGTHR KQKVFAQQAV VEPRPPVLPL NGNIAGTHFR HESFRQQAVL QPLPPLRPVN GSIGGTHFRD RLFDQQVLVE PRPLLPPFSG
501: SIAETHFRHR SFPQEAVLDP RPSVQSRNVY SQQLHNNYRN GFSGPPEEHH TKRLCLGNRY RALEETGNWR EEERYEDPRG KRNRYVGNFN GLEEFREIPR
601: FGIHSNPLDD PYRQVPLNAG TNGHLVHHRH DGRYNGEEPM HVGQWQDYTR RVGSPPLQQT PPPYDRVSYE DFRPHLGRSF YH
Arabidopsis Description
Nucleotidyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y216]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.