CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93081
CDY15046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39740.1	CDX93081	AT2G05230.1	21798944
AT2G39740.1	CDY15046	AT2G05230.1	21798944
AT2G39740.1	CDX93081	AT2G05250.1	21798944
AT2G39740.1	CDY15046	AT2G05250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07030	Canola	cytosol	95.05	95.05
AT2G39740.1	Thale cress	cytosol	77.23	76.32
Solyc06g051780.2.1	Tomato	cytosol	26.73	56.25
VIT_13s0019g02230.t01	Wine grape	cytosol	44.55	49.67
PGSC0003DMT400061199	Potato	cytosol	27.33	49.29
KRG97851	Soybean	cytosol	39.41	47.95
Os01t0846450-01	Rice	cytosol	18.81	46.12
KRH31028	Soybean	cytosol	39.01	43.3
Os01t0846500-02	Rice	cytosol	31.29	41.47
GSMUA_Achr6P34020_001	Banana	cytosol	34.46	41.43
TraesCS3B01G394900.1	Wheat	cytosol	31.29	32.58
OQU87849	Sorghum	cytosol	32.48	32.35
Zm00001d042885_P006	Maize	nucleus	29.7	25.82
KXG33685	Sorghum	nucleus	29.5	24.67
TraesCS3A01G362300.1	Wheat	nucleus	31.49	24.54
TraesCS3B01G394800.1	Wheat	nucleus	31.49	24.5
TraesCS3D01G356000.1	Wheat	nucleus	31.49	24.16
CDX99148	Canola	cytosol	17.03	18.9
CDX86037	Canola	cytosol	16.83	18.2
CDY37053	Canola	nucleus	14.65	10.22
CDY27369	Canola	nucleus	14.46	10.14

Protein Annotations

EnsemblPlants:CDX93239	EnsemblPlantsGene:GSBRNA2T00155195001	Gene3D:1.10.1410.10	Gene3D:3.30.460.10	ncoils:Coil	PANTHER:PTHR12271
PANTHER:PTHR12271:SF94	ProteinID:CDX93239	ProteinID:CDX93239.1	SEG:seg	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI0004EEC0E2	MapMan:16.10.2.6.1	:	:	:	:

Description

BnaC04g46570D

Coordinates

chrLK031875:-:502352..505106

Molecular Weight (calculated)

57011.8 Da

IEP (calculated)

11.139

GRAVY (calculated)

-0.565

Length

505 amino acids

Sequence
(BLAST)

001: MNRNPVLDPT LQEILQVVKP TRADWDTRIT VLDQLRDVLQ SVESLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGASIL FTGKKQKQTL LAELLRAMRA
101: SGLWYRLQFV IHARVPILKV VSGHQRISCD ISIDNLEGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHD INNPKNGTFN SYSLSLLVIF HLQTCVPAIL
201: PPLGEIYPRS AVDDLKGERK TAEESIAQLS AANIARFKSG SSRSVNRSSL SELLISFFAK FSDINLKATE LGVCPFTGRW ENISNNTRWL PKTYSLFVED
301: PFEQPENAAR SVSRKNLDRI AQVFEMTSRR LATDSNRNSI IGVLTAPHIS QSLVGTANVQ NHHHHANGSR HPHNLQGQAR PWNNQMQQNW SPSNNIQNPP
401: SWPGRARPRP QQNWSSQNNP RNMQQEQAPF RGQRPVVMTQ AQTQQQQQKS QYKNGKQPMT NAPSGSSQSQ GHIGKPPGQV NGVRFTRPAG PISQSQRGQM
501: WRPRR

Best Arabidopsis Sequence Match ( AT2G39740.3 )
(BLAST)

001: MSRNPFLDPT LQEILQVIKP TRADRDTRIT VIDQLRDVLQ SVECLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LGHLLRALRA
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q

Arabidopsis Description

HESO1Protein HESO1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XET5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.